Linkage information content of polymorphic genetic markers

被引:104
作者
Guo, XQ [1 ]
Elston, RC [1 ]
机构
[1] Case Western Reserve Univ, Rammelkamp Ctr Educ & Res, Dept Epidemiol & Biostat, Cleveland, OH 44109 USA
关键词
PIC value; marker polymorphism; model-free linkage analysis; sib pairs;
D O I
10.1159/000022855
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
The Polymorphism Information Content (PIC) value is often used to measure the informativeness of a genetic marker for linkage studies. The PIC value was first derived for the case of a rare dominant disease, when one of the parents is affected, and is a function of the particular mode of disease inheritance. We first generalize the definition of the PIC value in such a way that it does not depend on the mode of inheritance of the trait being studied, and then develop a Linkage Information Content (LIC) value to measure the informativeness of a marker about the identity-by-descent sharing status of particular types of pairs of relatives. Knowing the LIC value, it is possible to determine the effective number of fully informative pairs in a study when we have incomplete marker information.
引用
收藏
页码:112 / 118
页数:7
相关论文
共 7 条
[1]  
BOTSTEIN D, 1980, AM J HUM GENET, V32, P314
[2]  
*CAS W RES U, 1998, SAGE STAT AN GEN EP
[3]  
CHAKRAVARTI A, 1985, AM J HUM GENET, V37, P984
[4]  
CHAKRAVARTI A, 1991, HUM GENET, V87, P721
[5]  
Elston RC, 1996, GENET EPIDEMIOL, V13, P535, DOI 10.1002/(SICI)1098-2272(1996)13:6<535::AID-GEPI2>3.3.CO
[6]  
2-R
[7]  
SKOLNICK MH, 1984, GENETIC EPIDEMIOLOGY, P271