Despite the recent progress in RNA modification study, a comprehensive modification profile is still lacking for mammalian cells. Using a quantitative HPLC/MS/MS assay, we present here a study where RNA modifications are examined in term of the major RNA species. With paired slow- and fast proliferating cell lines, distinct RNA modification profiles are first revealed for diverse RNA species. Compared to mRNAs, increased ribose and nucleobase modifications are shown for the highly-structured tRNAs and rRNAs, lending support to their contribution to the formation of high-order structures. This study also reveals a dynamic tRNA modification profile in the fast-proliferating cells. In addition to cultured cells, this unique tRNA profile has been further confirmed with endometrial cancers and their adjacent normal tissues. Taken together, the results indicate that tRNA is a actively regulated RNA species in the fast-proliferating cancer cells, and suggest that they may play a more active role in biological process than expected. (C) 2016 Elsevier Inc. All rights reserved.
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BJORK GR, 1987, ANNU REV BIOCHEM, V56, P263, DOI 10.1146/annurev.biochem.56.1.263
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Univ Chicago, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USAUniv Chicago, Dept Chem, Chicago, IL 60637 USA
Fu, Ye
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Dominissini, Dan
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Rechavi, Gideon
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Chaim Sheba Med Ctr, Canc Res Ctr, IL-52621 Tel Hashomer, Israel
Tel Aviv Univ, Sackler Sch Med, IL-69978 Tel Aviv, IsraelUniv Chicago, Dept Chem, Chicago, IL 60637 USA
Rechavi, Gideon
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He, Chuan
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Univ Chicago, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USAUniv Chicago, Dept Chem, Chicago, IL 60637 USA
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Univ Chicago, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USAUniv Chicago, Dept Chem, Chicago, IL 60637 USA
Fu, Ye
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Dominissini, Dan
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Rechavi, Gideon
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Chaim Sheba Med Ctr, Canc Res Ctr, IL-52621 Tel Hashomer, Israel
Tel Aviv Univ, Sackler Sch Med, IL-69978 Tel Aviv, IsraelUniv Chicago, Dept Chem, Chicago, IL 60637 USA
Rechavi, Gideon
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He, Chuan
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Univ Chicago, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USAUniv Chicago, Dept Chem, Chicago, IL 60637 USA