tRNA modification profileq of the fast proliferating cancer cells

被引:41
作者
Dong, Chao [1 ]
Niu, Leilei [1 ]
Song, Wei [1 ]
Xiong, Xin [2 ]
Zhang, Xianhua [2 ]
Zhang, Zhenxi [1 ]
Yang, Yi [1 ]
Yi, Fan [1 ]
Zhan, Jun [3 ]
Zhang, Hongquan [3 ]
Yang, Zhenjun [1 ]
Zhang, Li-He [1 ]
Zhai, Suodi [2 ]
Li, Hua [1 ]
Ye, Min [1 ]
Du, Quan [1 ]
机构
[1] Peking Univ, Hosp 3, State Key Lab Nat & Biomimet Drugs, Sch Pharmaceut Sci,Dept Obstet & Gynecol, Beijing 100191, Peoples R China
[2] Peking Univ, Hosp 3, Dept Pharm, Beijing 100191, Peoples R China
[3] Peking Univ, Dept Anat Histol & Embryol, Lab Mol Cell Biol & Tumor Biol, Beijing 100191, Peoples R China
基金
北京市自然科学基金;
关键词
RNA modification; Cancer; Proliferation; DYNAMICS;
D O I
10.1016/j.bbrc.2016.05.124
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
070307 [化学生物学]; 071010 [生物化学与分子生物学];
摘要
Despite the recent progress in RNA modification study, a comprehensive modification profile is still lacking for mammalian cells. Using a quantitative HPLC/MS/MS assay, we present here a study where RNA modifications are examined in term of the major RNA species. With paired slow- and fast proliferating cell lines, distinct RNA modification profiles are first revealed for diverse RNA species. Compared to mRNAs, increased ribose and nucleobase modifications are shown for the highly-structured tRNAs and rRNAs, lending support to their contribution to the formation of high-order structures. This study also reveals a dynamic tRNA modification profile in the fast-proliferating cells. In addition to cultured cells, this unique tRNA profile has been further confirmed with endometrial cancers and their adjacent normal tissues. Taken together, the results indicate that tRNA is a actively regulated RNA species in the fast-proliferating cancer cells, and suggest that they may play a more active role in biological process than expected. (C) 2016 Elsevier Inc. All rights reserved.
引用
收藏
页码:340 / 345
页数:6
相关论文
共 15 条
[1]
BJORK GR, 1987, ANNU REV BIOCHEM, V56, P263, DOI 10.1146/annurev.biochem.56.1.263
[2]
Gene expression regulation mediated through reversible m6A RNA methylation [J].
Fu, Ye ;
Dominissini, Dan ;
Rechavi, Gideon ;
He, Chuan .
NATURE REVIEWS GENETICS, 2014, 15 (05) :293-306
[3]
A Dual Program for Translation Regulation in Cellular Proliferation and Differentiation [J].
Gingold, Hila ;
Tehler, Disa ;
Christoffersen, Nanna R. ;
Nielsen, Morten M. ;
Asmar, Fazila ;
Kooistra, Susanne M. ;
Christophersen, Nicolaj S. ;
Christensen, Lise Lotte ;
Borre, Michael ;
Sorensen, Karina D. ;
Andersen, Lars D. ;
Andersen, Claus L. ;
Hulleman, Esther ;
Wurdinger, Tom ;
Ralfkiaer, Elisabeth ;
Helin, Kristian ;
Gronbaek, Kirsten ;
Omtoft, Torben ;
Waszak, Sebastian M. ;
Dahan, Orna ;
Pedersen, Jakob Skou ;
Lund, Anders H. ;
Pilpel, Yitzhak .
CELL, 2014, 158 (06) :1281-1292
[4]
Translational control in stress and apoptosis [J].
Holcik, M ;
Sonenberg, N .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2005, 6 (04) :318-327
[5]
A decade of surprises for tRNA nuclear-cytoplasmic dynamics [J].
Hopper, Anita K. ;
Shaheen, Hussam H. .
TRENDS IN CELL BIOLOGY, 2008, 18 (03) :98-104
[6]
Transfer RNA Post-Transcriptional Processing, Turnover, and Subcellular Dynamics in the Yeast Saccharomyces cerevisiae [J].
Hopper, Anita K. .
GENETICS, 2013, 194 (01) :43-67
[7]
Jia GF, 2011, NAT CHEM BIOL, V7, P885, DOI [10.1038/NCHEMBIO.687, 10.1038/nchembio.687]
[8]
CONFORMATIONAL RIGIDITY OF SPECIFIC PYRIMIDINE RESIDUES IN TRANSFER-RNA ARISES FROM POSTTRANSCRIPTIONAL MODIFICATIONS THAT ENHANCE STERIC INTERACTION BETWEEN THE BASE AND THE 2'-HYDROXYL GROUP [J].
KAWAI, G ;
YAMAMOTO, Y ;
KAMIMURA, T ;
MASEGI, T ;
SEKINE, M ;
HATA, T ;
IIMORI, T ;
WATANABE, T ;
MIYAZAWA, T ;
YOKOYAMA, S .
BIOCHEMISTRY, 1992, 31 (04) :1040-1046
[9]
Induced fit and "lock and key" recognition of 5 S RNA by zinc fingers of transcription factor IIIA [J].
Lee, BM ;
Xu, J ;
Clarkson, BK ;
Martinez-Yamout, MA ;
Dyson, HJ ;
Case, DA ;
Gottesfeld, JM ;
Wright, PE .
JOURNAL OF MOLECULAR BIOLOGY, 2006, 357 (01) :275-291
[10]
RETRACTED: Elevated tRNAiMet synthesis can drive cell proliferation and oncogenic transformation (Retracted article. See vol. 151, pg. 455, 2012) [J].
Marshall, Lynne ;
Kenneth, Niall S. ;
White, Robert J. .
CELL, 2008, 133 (01) :78-89