Rapid and efficient clathrin-mediated endocytosis revealed in genome-edited mammalian cells

被引:179
作者
Doyon, Jeffrey B. [1 ]
Zeitler, Bryan [2 ]
Cheng, Jackie [1 ]
Cheng, Aaron T. [1 ]
Cherone, Jennifer M. [2 ]
Santiago, Yolanda [2 ]
Lee, Andrew H. [2 ]
Vo, Thuy D. [2 ]
Doyon, Yannick [2 ]
Miller, Jeffrey C. [2 ]
Paschon, David E. [2 ]
Zhang, Lei [2 ]
Rebar, Edward J. [2 ]
Gregory, Philip D. [2 ]
Urnov, Fyodor D. [2 ]
Drubin, David G. [1 ]
机构
[1] Univ Calif Berkeley, Dept Mol & Cell Biol, Berkeley, CA 94720 USA
[2] Sangamo BioSci Inc, Richmond, CA 94804 USA
关键词
ZINC; GENE; PROTEASOME; PROTEINS; COMPLEX; CFTR;
D O I
10.1038/ncb2175
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Clathrin-mediated endocytosis (CME) is the best-studied pathway by which cells selectively internalize molecules from the plasma membrane and surrounding environment. Previous live-cell imaging studies using ectopically overexpressed fluorescent fusions of endocytic proteins indicated that mammalian CME is a highly dynamic but inefficient and heterogeneous process. In contrast, studies of endocytosis in budding yeast using fluorescent protein fusions expressed at physiological levels from native genomic loci have revealed a process that is very regular and efficient. To analyse endocytic dynamics in mammalian cells in which endogenous protein stoichiometry is preserved, we targeted zinc finger nucleases (ZFNs) to the clathrin light chain A and dynamin-2 genomic loci and generated cell lines expressing fluorescent protein fusions from each locus. The genome-edited cells exhibited enhanced endocytic function, dynamics and efficiency when compared with previously studied cells, indicating that CME is highly sensitive to the levels of its protein components. Our study establishes that ZFN-mediated genome editing is a robust tool for expressing protein fusions at endogenous levels to faithfully report subcellular localization and dynamics.
引用
收藏
页码:331 / U327
页数:20
相关论文
共 37 条
[1]   Biological basket weaving: Formation and function of clathrin-coated vesicles [J].
Brodsky, FM ;
Chen, CY ;
Knuehl, C ;
Towler, MC ;
Wakeham, DE .
ANNUAL REVIEW OF CELL AND DEVELOPMENTAL BIOLOGY, 2001, 17 :517-568
[2]   Functional genomics, proteomics, and regulatory DNA analysis in isogenic settings using zinc finger nuclease-driven transgenesis into a safe harbor locus in the human genome [J].
DeKelver, Russell C. ;
Choi, Vivian M. ;
Moehle, Erica A. ;
Paschon, David E. ;
Hockemeyer, Dirk ;
Meijsing, Sebastiaan H. ;
Sancak, Yasemin ;
Cui, Xiaoxia ;
Steine, Eve Line J. ;
Miller, Jeffrey C. ;
Tam, Phillip ;
Bartsevich, Victor V. ;
Meng, Xiangdong ;
Rupniewski, Igor ;
Gopalan, Sunita M. ;
Sun, Helena C. ;
Pitz, Kathleen J. ;
Rock, Jeremy M. ;
Zhang, Lei ;
Davis, Gregory D. ;
Rebar, Edward J. ;
Cheeseman, Iain M. ;
Yamamoto, Keith R. ;
Sabatini, David M. ;
Jaenisch, Rudolf ;
Gregory, Philip D. ;
Urnov, Fyodor D. .
GENOME RESEARCH, 2010, 20 (08) :1133-1142
[3]   Enhancing zinc-finger-nuclease activity with improved obligate heterodimeric architectures [J].
Doyon, Yannick ;
Vo, Thuy D. ;
Mendel, Matthew C. ;
Greenberg, Shon G. ;
Wang, Jianbin ;
Xia, Danny F. ;
Miller, Jeffrey C. ;
Urnov, Fyodor D. ;
Gregory, Philip D. ;
Holmes, Michael C. .
NATURE METHODS, 2011, 8 (01) :74-U108
[4]  
Doyon Y, 2010, NAT METHODS, V7, P459, DOI [10.1038/NMETH.1456, 10.1038/nmeth.1456]
[5]   Endocytosis by random initiation and stabilization of clathrin-coated pits [J].
Ehrlich, M ;
Boll, W ;
van Oijen, A ;
Hariharan, R ;
Chandran, K ;
Nibert, ML ;
Kirchhausen, T .
CELL, 2004, 118 (05) :591-605
[6]   LOW-DENSITY LIPOPROTEIN PATHWAY AND ITS RELATION TO ATHEROSCLEROSIS [J].
GOLDSTEIN, JL ;
BROWN, MS .
ANNUAL REVIEW OF BIOCHEMISTRY, 1977, 46 :897-930
[7]   Efficient targeting of expressed and silent genes in human ESCs and iPSCs using zinc-finger nucleases [J].
Hockemeyer, Dirk ;
Soldner, Frank ;
Beard, Caroline ;
Gao, Qing ;
Mitalipova, Maisam ;
DeKelver, Russell C. ;
Katibah, George E. ;
Amora, Ranier ;
Boydston, Elizabeth A. ;
Zeitler, Bryan ;
Meng, Xiangdong ;
Miller, Jeffrey C. ;
Zhang, Lei ;
Rebar, Edward J. ;
Gregory, Philip D. ;
Urnov, Fyodor D. ;
Jaenisch, Rudolf .
NATURE BIOTECHNOLOGY, 2009, 27 (09) :851-U110
[8]   Analysis of clathrin-mediated endocytosis of epidermal growth factor receptor by RNA interference [J].
Huang, FT ;
Khvorova, A ;
Marshall, W ;
Sorkin, A .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (16) :16657-16661
[9]   A rapid, generally applicable method to engineer zinc fingers illustrated by targeting the HIV-1 promoter [J].
Isalan, M ;
Klug, A ;
Choo, Y .
NATURE BIOTECHNOLOGY, 2001, 19 (07) :656-660
[10]   MULTIPLE PROTEOLYTIC SYSTEMS, INCLUDING THE PROTEASOME, CONTRIBUTE TO CFTR PROCESSING [J].
JENSEN, TJ ;
LOO, MA ;
PIND, S ;
WILLIAMS, DB ;
GOLDBERG, AL ;
RIORDAN, JR .
CELL, 1995, 83 (01) :129-135