Adopting a database as a solution to managing electron image data

被引:7
作者
Metoz, F [1 ]
Sherman, MB
Schmid, MF
机构
[1] CEA, Inst Biol Struct, Grenoble, France
[2] Purdue Univ, Dept Biol Sci, W Lafayette, IN 47907 USA
[3] Baylor Coll Med, Verna & Marrs Mclean Dept Biochem & Mol Biol, Houston, TX 77030 USA
关键词
acrosomal bundle; database; graphical user interface; PostgreSQL;
D O I
10.1006/jsbi.2001.4368
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A database was used for data management and interprogram communication in an image processing and three-dimensional reconstruction program suite for biological bundles. The programs were modified from the MRC crystallographic package. The database server works with local and remote programs and data sets, allows simultaneous requests from multiple clients, and maintains multiple databases and data tables within them. It has built-in security for the data access. Several graphical user interfaces are available to view and/or edit data tables. In addition, FORTRAN interface and function libraries are written to communicate with image processing software. The data management overhead is inexpensive, requiring only narrow bandwidth from the network. It easily handles several data tables with over 1000 entries. (C) 2001 Academic Press.
引用
收藏
页码:170 / 175
页数:6
相关论文
共 9 条
[1]   INTERNATIONAL UNION OF CRYSTALLOGRAPHY COMMISSION ON CRYSTALLOGRAPHIC COMPUTING - STANDARD TESTS FOR CRYSTALLOGRAPHIC COMPUTER PROGRAMS - . CALCULATIONS COMMONLY USED IN CRYSTAL-STRUCTURE ANALYSIS [J].
AHMED, FR ;
STEWART, JM ;
CRUICKSH.DW ;
LARSON, AC .
ACTA CRYSTALLOGRAPHICA SECTION A-CRYSTAL PHYSICS DIFFRACTION THEORETICAL AND GENERAL CRYSTALLOGRAPHY, 1972, A 28 (SEP1) :365-&
[2]   3 DIMENSIONAL RECONSTRUCTIONS OF SPHERICAL VIRUSES BY FOURIER SYNTHESIS FROM ELECTRON MICROGRAPHS [J].
CROWTHER, RA ;
AMOS, LA ;
FINCH, JT ;
DEROSIER, DJ ;
KLUG, A .
NATURE, 1970, 226 (5244) :421-&
[3]   MRC image processing programs [J].
Crowther, RA ;
Henderson, R ;
Smith, JM .
JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) :9-16
[4]   SPIDER and WEB: Processing and visualization of images in 3D electron microscopy and related fields [J].
Frank, J ;
Radermacher, M ;
Penczek, P ;
Zhu, J ;
Li, YH ;
Ladjadj, M ;
Leith, A .
JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) :190-199
[5]   XTAL - NEW CONCEPTS IN PROGRAM SYSTEM-DESIGN [J].
HALL, SR ;
STEWART, JM ;
MUNN, RJ .
ACTA CRYSTALLOGRAPHICA SECTION A, 1980, 36 (NOV) :979-989
[6]   3-DIMENSIONAL MODEL OF PURPLE MEMBRANE OBTAINED BY ELECTRON-MICROSCOPY [J].
HENDERSON, R ;
UNWIN, PNT .
NATURE, 1975, 257 (5521) :28-32
[7]   A strategy for electron tomographic data collection and crystallographic reconstruction of biological bundles [J].
Sherman, MB ;
Jakana, J ;
Sun, SJ ;
Matsudaira, P ;
Chiu, W ;
Schmid, MF .
JOURNAL OF STRUCTURAL BIOLOGY, 1997, 120 (03) :245-256
[8]   A new generation of the IMAGIC image processing system [J].
vanHeel, M ;
Harauz, G ;
Orlova, EV ;
Schmidt, R ;
Schatz, M .
JOURNAL OF STRUCTURAL BIOLOGY, 1996, 116 (01) :17-24
[9]   Seeing the herpesvirus capsid at 8.5 Å [J].
Zhou, ZH ;
Dougherty, M ;
Jakana, J ;
He, J ;
Rixon, FJ ;
Chiu, W .
SCIENCE, 2000, 288 (5467) :877-880