MaizeGDB, the community database for maize genetics and genomics

被引:145
作者
Lawrence, CJ
Dong, OF
Polacco, ML
Seigfried, TE
Brendel, V [1 ]
机构
[1] Iowa State Univ, Dept Genet Dev & Cell Biol, Ames, IA 50011 USA
[2] Iowa State Univ, Dept Stat, Ames, IA 50011 USA
[3] Univ Missouri, Dept Agron, Columbia, MO 65211 USA
[4] ARS, USDA, Columbia, MO 65211 USA
关键词
D O I
10.1093/nar/gkh011
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The Maize Genetics and Genomics Database (MaizeGDB) is a central repository for maize sequence, stock, phenotype, genotypic and karyotypic variation, and chromosomal mapping data. In addition, MaizeGDB provides contact information for over 2400 maize cooperative researchers, facilitating interactions between members of the rapidly expanding maize community. MaizeGDB represents the synthesis of all data available previously from ZmDB and from MaizeDB-databases that have been superseded by MaizeGDB. MaizeGDB provides web-based tools for ordering maize stocks from several organizations including the Maize Genetics Cooperation Stock Center and the North Central Regional Plant Introduction Station (NCRPIS). Sequence searches yield records displayed with embedded links to facilitate ordering cloned sequences from various groups including the Maize Gene Discovery Project and the Clemson University Genomics Institute. An intuitive web interface is implemented to facilitate navigation between related data, and analytical tools are embedded within data displays. Web-based curation tools for both designated experts and general researchers are currently under development. MaizeGDB can be accessed at http://www.maizegdb.org/.
引用
收藏
页码:D393 / D397
页数:5
相关论文
共 19 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]  
[Anonymous], 1935, CORNELL U AES
[3]  
[Anonymous], BIOINFORMATICS DATAB
[4]  
BEADLE GW, 1930, THESIS CORNELL U ITH
[5]   A correlation of cytological and genetical crossing-over in zea mays [J].
Creighton, HB ;
McClintock, B .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1931, 17 :492-497
[6]   PlantGDB, plant genome database and analysis tools [J].
Dong, QF ;
Schlueter, SD ;
Brendel, V .
NUCLEIC ACIDS RESEARCH, 2004, 32 :D354-D359
[7]   ZmDB, an integrated database for maize genome research [J].
Dong, QF ;
Roy, L ;
Freeling, M ;
Walbot, V ;
Brendel, V .
NUCLEIC ACIDS RESEARCH, 2003, 31 (01) :244-247
[8]  
Emerson R A., 1913, Bull. Agric. Exp. Sta. NE, V2, P1
[9]  
EMERSON RA, 1918, CORNELL U AGR EXP ST, V16, P225
[10]  
FEDEROFF N, 1992, DYNAMIC GENOME B MCC