A draft physical map of a D-genome cotton species (Gossypium raimondii)

被引：34

作者：

Lin, Lifeng ^{[1
,7
]}

Pierce, Gary J. ^{[1
]}

Bowers, John E. ^{[1
,7
]}

Estill, James C. ^{[1
,7
]}

Compton, Rosana O. ^{[1
]}

Rainville, Lisa K. ^{[1
]}

Kim, Changsoo ^{[1
]}

Lemke, Cornelia ^{[1
]}

Rong, Junkang ^{[1
,8
]}

Tang, Haibao ^{[1
,9
]}

Wang, Xiyin ^{[1
]}

Braidotti, Michele ^{[3
,4
]}

Chen, Amy H. ^{[1
]}

Chicola, Kristen ^{[1
]}

Collura, Kristi ^{[3
,4
]}

Epps, Ethan ^{[1
]}

Golser, Wolfgang ^{[3
,4
]}

Grover, Corrinne ^{[2
]}

Ingles, Jennifer ^{[1
]}

Karunakaran, Santhosh ^{[1
]}

Kudrna, Dave ^{[3
,4
]}

Olive, Jaime ^{[1
]}

Tabassum, Nabila ^{[5
]}

Um, Eareana ^{[1
]}

Wissotski, Marina ^{[3
,4
]}

Yu, Yeisoo ^{[3
,4
]}

Zuccolo, Andrea ^{[3
,4
]}

Rahman, Mehboob Ur ^{[5
]}

Peterson, Daniel G. ^{[1
,6
]}

Wing, Rod A. ^{[3
,4
]}

Wendel, Jonathan F. ^{[2
]}

Paterson, Andrew H. ^{[1
,7
]}

机构：

[1] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30605 USA

[2] Iowa State Univ, Dept Ecol Evolut & Organismal Biol, Ames, IA 50011 USA

[3] Univ Arizona, Arizona Genom Inst, Sch Plant Sci, Tucson, AZ 85721 USA

[4] Univ Arizona, Inst Collaborat Res BIO5, Tucson, AZ 85721 USA

[5] NIBGE, Faisalabad, Pakistan

[6] Mississippi State Univ, Life Sci & Biotechnol Inst, Mississippi State, MS 39762 USA

[7] Univ Georgia, Dept Plant Biol, Athens, GA 30602 USA

[8] Zhejiang Forestry Univ, Sch Agr & Food Sci, Hangzhou 311300, Zhejiang, Peoples R China

[9] Univ Calif Berkeley, Coll Nat Resources, Dept Plant & Microbiol, Berkeley, CA 94720 USA

来源：

BMC GENOMICS | 2010年 / 11卷

基金：

美国国家科学基金会;

关键词：

QUANTITATIVE TRAIT LOCI; KNOT NEMATODE RESISTANCE; VERTICILLIUM WILT RESISTANCE; BACKCROSS-SELF APPROACH; LEAF MORPHOLOGICAL TRAITS; FERTILITY RESTORER GENE; FIBER QUALITY TRAITS; HIRSUTUM L; UPLAND COTTON; QTL ANALYSIS;

D O I：

10.1186/1471-2164-11-395

中图分类号：

Q81 [生物工程学（生物技术）]; Q93 [微生物学];

学科分类号：

071005 ; 0836 ; 090102 ; 100705 ;

摘要：

Background: Genetically anchored physical maps of large eukaryotic genomes have proven useful both for their intrinsic merit and as an adjunct to genome sequencing. Cultivated tetraploid cottons, Gossypium hirsutum and G. barbadense, share a common ancestor formed by a merger of the A and D genomes about 1-2 million years ago. Toward the long-term goal of characterizing the spectrum of diversity among cotton genomes, the worldwide cotton community has prioritized the D genome progenitor Gossypium raimondii for complete sequencing. Results: A whole genome physical map of G. raimondii, the putative D genome ancestral species of tetraploid cottons was assembled, integrating genetically-anchored overgo hybridization probes, agarose based fingerprints and 'high information content fingerprinting' (HICF). A total of 13,662 BAC-end sequences and 2,828 DNA probes were used in genetically anchoring 1585 contigs to a cotton consensus genetic map, and 370 and 438 contigs, respectively to Arabidopsis thaliana (AT) and Vitis vinifera (VV) whole genome sequences. Conclusion: Several lines of evidence suggest that the G. raimondii genome is comprised of two qualitatively different components. Much of the gene rich component is aligned to the Arabidopsis and Vitis vinifera genomes and shows promise for utilizing translational genomic approaches in understanding this important genome and its resident genes. The integrated genetic-physical map is of value both in assembling and validating a planned reference sequence.

引用

页数：17

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