A Platform for Rapid Exploration of Aging and Diseases in a Naturally Short-Lived Vertebrate

被引:169
作者
Harel, Itamar [1 ]
Benayoun, Berenice A. [1 ]
Machado, Ben [1 ]
Singh, Param Priya [1 ]
Hu, Chi-Kuo [1 ]
Pech, Matthew F. [2 ,3 ]
Valenzano, Dario Riccardo [1 ]
Zhang, Elisa [1 ]
Sharp, Sabrina C. [1 ]
Artandi, Steven E. [2 ,3 ,4 ]
Brunet, Anne [1 ,4 ]
机构
[1] Stanford Univ, Dept Genet, Stanford, CA 94305 USA
[2] Stanford Univ, Sch Med, Dept Med, Stanford, CA 94305 USA
[3] Stanford Univ, Sch Med, Dept Biochem, Stanford, CA 94305 USA
[4] Glenn Labs Biol Aging Stanford, Stanford, CA 94305 USA
关键词
FISH NOTHOBRANCHIUS-FURZERI; TELOMERASE; GENOME; GENETICS; MODEL; BIOLOGY; LONGEVITY; CANCER; RATS; LIFE;
D O I
10.1016/j.cell.2015.01.038
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Aging is a complex process that affects multiple organs. Modeling aging and age-related diseases in the lab is challenging because classical vertebrate models have relatively long lifespans. Here, we develop the first platform for rapid exploration of age-dependent traits and diseases in vertebrates, using the naturally short-lived African turquoise killifish. We provide an integrative genomic and genome-editing toolkit in this organism using our de-novo-assembled genome and the CRISPR/Cas9 technology. We mutate many genes encompassing the hallmarks of aging, and for a subset, we produce stable lines within 2-3 months. As a proof of principle, we show that fish deficient for the protein subunit of telomerase exhibit the fastest onset of telomere-related pathologies among vertebrates. We further demonstrate the feasibility of creating specific genetic variants. This genome-to-phenotype platform represents a unique resource for studying vertebrate aging and disease in a high-throughput manner and for investigating candidates arising from human genome-wide studies.
引用
收藏
页码:1013 / 1026
页数:14
相关论文
共 49 条
[1]   Cancer in dyskeratosis congenita [J].
Alter, Blanche P. ;
Giri, Neelam ;
Savage, Sharon A. ;
Rosenberg, Philip S. .
BLOOD, 2009, 113 (26) :6549-6557
[2]   An integrated map of genetic variation from 1,092 human genomes [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Schmidt, Jeanette P. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Dinh, Huyen ;
Kovar, Christie ;
Lee, Sandra ;
Lewis, Lora ;
Muzny, Donna ;
Reid, Jeff ;
Wang, Min ;
Wang, Jun ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Li, Zhuo ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Su, Zhe ;
Tai, Shuaishuai ;
Tang, Meifang .
NATURE, 2012, 491 (7422) :56-65
[3]   Premature aging in telomerase-deficient zebrafish [J].
Anchelin, Monique ;
Alcaraz-Perez, Francisca ;
Martinez, Carlos M. ;
Bernabe-Garcia, Manuel ;
Mulero, Victoriano ;
Cayuela, Maria L. .
DISEASE MODELS & MECHANISMS, 2013, 6 (05) :1101-1112
[4]   Haploinsufficiency of telomerase reverse transcriptase leads to anticipation in autosomal dominant dyskeratosis congenita [J].
Armanios, M ;
Chen, JL ;
Chang, YPC ;
Brodsky, RA ;
Hawkins, A ;
Griffin, CA ;
Eshleman, JR ;
Cohen, AR ;
Chakravarti, A ;
Hamosh, A ;
Greider, CW .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (44) :15960-15964
[5]   Syndromes of Telomere Shortening [J].
Armanios, Mary .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2009, 10 :45-61
[6]   Telomeres and telomerase in cancer [J].
Artandi, Steven E. ;
DePinho, Ronald A. .
CARCINOGENESIS, 2010, 31 (01) :9-18
[7]   Cats, "Rats,'' and Bats: The Comparative Biology of Aging in the 21st Century [J].
Austad, Steven N. .
INTEGRATIVE AND COMPARATIVE BIOLOGY, 2010, 50 (05) :783-792
[8]   Understanding telomere diseases through analysis of patient-derived iPS cells [J].
Batista, Luis F. Z. ;
Artandi, Steven E. .
CURRENT OPINION IN GENETICS & DEVELOPMENT, 2013, 23 (05) :526-533
[9]   In vivo genome editing using a high-efficiency TALEN system [J].
Bedell, Victoria M. ;
Wang, Ying ;
Campbell, Jarryd M. ;
Poshusta, Tanya L. ;
Starker, Colby G. ;
Krug, Randall G., II ;
Tan, Wenfang ;
Penheiter, Sumedha G. ;
Ma, Alvin C. ;
Leung, Anskar Y. H. ;
Fahrenkrug, Scott C. ;
Carlson, Daniel F. ;
Voytas, Daniel F. ;
Clark, Karl J. ;
Essner, Jeffrey J. ;
Ekker, Stephen C. .
NATURE, 2012, 491 (7422) :114-U133
[10]   Dyskeratosis congenita [J].
Bessler, Monica ;
Wilson, David B. ;
Mason, Philip J. .
FEBS LETTERS, 2010, 584 (17) :3831-3838