The genome sequence of Rickettsia felis identifies the first putative conjugative plasmid in an obligate intracellular parasite

被引:196
作者
Ogata, H [1 ]
Renesto, P
Audic, S
Robert, C
Blanc, G
Fournier, PE
Parinello, H
Claverie, JM
Raoult, D
机构
[1] CNRS, IBSM, UPR 2589, Struct & Genom Informat Lab, Marseille, France
[2] Fac Med Marseille, CNRS, IFR 48, UMR 6020,Unite Rickettsies, F-13385 Marseille, France
关键词
D O I
10.1371/journal.pbio.0030248
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We sequenced the genome of Rickettsia felis, a flea-associated obligate intracellular alpha-proteobacterium causing spotted fever in humans. Besides a circular chromosome of 1,485,148 bp, R. felis exhibits the first putative conjugative plasmid identified among obligate intracellular bacteria. This plasmid is found in a short ( 39,263 bp) and a long ( 62,829 bp) form. R. felis contrasts with previously sequenced Rickettsia in terms of many other features, including a number of transposases, several chromosomal toxin - antitoxin genes, many more spoT genes, and a very large number of ankyrin- and tetratricopeptide-motif-containing genes. Host-invasion-related genes for patatin and RickA were found. Several phenotypes predicted from genome analysis were experimentally tested: conjugative pili and mating were observed, as well as beta-lactamase activity, actin-polymerization-driven mobility, and hemolytic properties. Our study demonstrates that complete genome sequencing is the fastest approach to reveal phenotypic characters of recently cultured obligate intracellular bacteria.
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页码:1391 / 1402
页数:12
相关论文
共 66 条
[1]   INFECTION OF COLONIZED CAT FLEAS, CTENOCEPHALIDES-FELIS (BOUCHE), WITH A RICKETTSIA-LIKE MICROORGANISM [J].
ADAMS, JR ;
SCHMIDTMANN, ET ;
AZAD, AF .
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE, 1990, 43 (04) :400-409
[2]   The louse-borne human pathogen Bartonella quintana is a genomic derivative of the zoonotic agent Bartonella henselae [J].
Alsmark, CM ;
Frank, AC ;
Karlberg, EO ;
Legault, BA ;
Ardell, DH ;
Canbäck, B ;
Eriksson, AS ;
Näslund, AK ;
Handley, SA ;
Huvet, M ;
La Scola, B ;
Holmberg, M ;
Andersson, SGE .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (26) :9716-9721
[3]   The conjugal transfer system of Agrobacterium tumefaciens octopine-type Ti plasmids is closely related to the transfer system of an IncP plasmid and distantly related to Ti plasmid vir genes [J].
AltMorbe, J ;
Stryker, JL ;
Fuqua, C ;
Li, PL ;
Farrand, SK ;
Winans, SC .
JOURNAL OF BACTERIOLOGY, 1996, 178 (14) :4248-4257
[4]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[5]   Pseudogenes, junk DNA, and the dynamics of Rickettsia genomes [J].
Andersson, JO ;
Andersson, SGE .
MOLECULAR BIOLOGY AND EVOLUTION, 2001, 18 (05) :829-839
[6]   The genome sequence of Rickettsia prowazekii and the origin of mitochondria [J].
Andersson, SGE ;
Zomorodipour, A ;
Andersson, JO ;
Sicheritz-Pontén, T ;
Alsmark, UCM ;
Podowski, RM ;
Näslund, AK ;
Eriksson, AS ;
Winkler, HH ;
Kurland, CG .
NATURE, 1998, 396 (6707) :133-140
[7]  
Apweiler R, 2004, NUCLEIC ACIDS RES, V32, pD115, DOI [10.1093/nar/gkw1099, 10.1093/nar/gkh131]
[8]   Self-identification of protein-coding regions in microbial genomes [J].
Audic, S ;
Claverie, JM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (17) :10026-10031
[9]   GENETIC-CHARACTERIZATION AND TRANSOVARIAL TRANSMISSION OF A TYPHUS-LIKE RICKETTSIA FOUND IN CAT FLEAS [J].
AZAD, AF ;
SACCI, JB ;
NELSON, WM ;
DASCH, GA ;
SCHMIDTMANN, ET ;
CARL, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (01) :43-46
[10]   Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei [J].
Bentley, SD ;
Maiwald, M ;
Murphy, LD ;
Pallen, MJ ;
Yeats, CA ;
Dover, LG ;
Norbertczak, HT ;
Besra, GS ;
Quail, MA ;
Harris, DE ;
von Herbay, A ;
Goble, A ;
Rutter, S ;
Squares, R ;
Squares, S ;
Barrell, BG ;
Parkhill, J ;
Relman, DA .
LANCET, 2003, 361 (9358) :637-644