PRIMEX: rapid identification of oligonucleotide matches in whole genomes

被引：22

作者：

Lexa, M

Valle, G

机构：

[1] Univ Padua, CRIBI, Ctr Biotechnol, I-35131 Padua, Italy

[2] Masaryk Univ, Lab Funct Gen & Prote, CS-61137 Brno, Czech Republic

来源：

BIOINFORMATICS | 2003年 / 19卷 / 18期

关键词：

D O I：

10.1093/bioinformatics/btg350

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

PRIMEX (PRImer Match EXtractor) can detect oligonucleotide sequences in whole genomes, allowing for mismatches. Using a word lookup table and server functionality, PRIMEX accepts queries from client software and returns matches rapidly. We find it faster and more sensitive than currently available tools.

引用

页码：2486 / 2488

页数：3

共 9 条

[1]

ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999

[2]

[Anonymous], 1994, FAST ALGORITHM MULTI

[3]

Kent WJ, 2002, GENOME RES, V12, P656, DOI [10.1101/gr.229202, 10.1101/gr.229202. Article published online before March 2002]

[4] Virtual PCR [J].