Complete genome sequence of Caulobacter crescentus

被引:423
作者
Nierman, WC
Feldblyum, TV
Laub, MT
Paulsen, IT
Nelson, KE
Eisen, J
Heidelberg, JF
Alley, MRK
Ohta, N
Maddock, JR
Potocka, I
Nelson, WC
Newton, A
Stephens, C
Phadke, ND
Ely, B
DeBoy, RT
Dodson, RJ
Durkin, AS
Gwinn, ML
Haft, DH
Kolonay, JF
Smit, J
Craven, MB
Khouri, H
Shetty, J
Berry, K
Utterback, T
Tran, K
Wolf, A
Vamathevan, J
Ermolaeva, M
White, O
Salzberg, SL
Venter, JC
Shapiro, L
Fraser, CM
机构
[1] Inst Genom Res, Rockville, MD 20850 USA
[2] Stanford Univ, Sch Med, Beckman Ctr, Dept Dev Biol, Stanford, CA 94305 USA
[3] Univ London Imperial Coll Sci Technol & Med, Dept Biochem, London SW7 2AY, England
[4] Princeton Univ, Dept Mol Biol, Princeton, NJ 08544 USA
[5] Univ Michigan, Dept Biol, Ann Arbor, MI 48109 USA
[6] Santa Clara Univ, Dept Biol, Santa Clara, CA 95053 USA
[7] Univ S Carolina, Dept Biol Sci, Columbia, SC 29208 USA
[8] Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC V6T 1Z3, Canada
[9] Celera Genom, Rockville, MD 20850 USA
关键词
D O I
10.1073/pnas.061029298
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The complete genome sequence of Caulobacter crescentus was determined to be 4,016,942 base pairs in a single circular chromosome encoding 3,767 genes. This organism, which grows in a dilute aquatic environment coordinates the cell division cycle and multiple cell differentiation events. With the annotated genome sequence, a full description of the genetic network that controls bacterial differentiation, cell growth, and cell cycle progression is within reach. Two-component signal transduction proteins are known to play a significant role in cell cycle progression. Genome analysis revealed that the C. crescentus genome encodes a significantly higher number of these signaling proteins (105) than any bacterial genome sequenced thus far. Another regulatory mechanism involved in cell cycle progression is DNA methylation. The occurrence of the recognition sequence for an essential DNA methylating enzyme that is required for cell cycle regulation is severely limited and shows a bias to intergenic regions. The genome contains multiple clusters of genes encoding proteins essential for survival in a nutrient poor habitat. Included are those involved in chemotaxis, outer membrane channel function, degradation of aromatic ring compounds, and the breakdown of plant-derived carbon sources, in addition to many extracytoplasmic function sigma factors, providing the organism with the ability to respond to a wide range of environmental fluctuations. C. crescentus is, to our knowledge, the first free-living alpha -class proteobacterium to be sequenced and will serve as a foundation for exploring the biology of this group of bacteria, which includes the obligate endosymbiont and human pathogen Rickettsia prowazekii, the plant pathogen Agrobacterium tumefaciens, and the bovine and human pathogen Brucella abortus.
引用
收藏
页码:4136 / 4141
页数:6
相关论文
共 42 条
[1]  
ALLEY MRK, 1991, GENETICS, V129, P333
[2]   The genome sequence of Rickettsia prowazekii and the origin of mitochondria [J].
Andersson, SGE ;
Zomorodipour, A ;
Andersson, JO ;
Sicheritz-Pontén, T ;
Alsmark, UCM ;
Podowski, RM ;
Näslund, AK ;
Eriksson, AS ;
Winkler, HH ;
Kurland, CG .
NATURE, 1998, 396 (6707) :133-140
[3]   The Caulobacter crescentus paracrystalline S-layer protein is secreted by an ABC transporter (type I) secretion apparatus [J].
Awram, P ;
Smit, J .
JOURNAL OF BACTERIOLOGY, 1998, 180 (12) :3062-3069
[4]  
Bateman A, 2004, NUCLEIC ACIDS RES, V32, pD138, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
[5]   Cell-surface display of a Pseudomonas aeruginosa strain K pilin peptide within the paracrystalline S-layer of Caulobacter crescentus [J].
Bingle, WH ;
Nomellini, JF ;
Smit, J .
MOLECULAR MICROBIOLOGY, 1997, 26 (02) :277-288
[6]   The complete genome sequence of Escherichia coli K-12 [J].
Blattner, FR ;
Plunkett, G ;
Bloch, CA ;
Perna, NT ;
Burland, V ;
Riley, M ;
ColladoVides, J ;
Glasner, JD ;
Rode, CK ;
Mayhew, GF ;
Gregor, J ;
Davis, NW ;
Kirkpatrick, HA ;
Goeden, MA ;
Rose, DJ ;
Mau, B ;
Shao, Y .
SCIENCE, 1997, 277 (5331) :1453-+
[7]  
Brun YV, 2000, PROKARYOTIC DEVELOPMENT, P297
[8]   A TEMPORALLY CONTROLLED SIGMA-FACTOR IS REQUIRED FOR POLAR MORPHOGENESIS AND NORMAL-CELL DIVISION IN CAULOBACTER [J].
BRUN, YV ;
SHAPIRO, L .
GENES & DEVELOPMENT, 1992, 6 (12A) :2395-2408
[9]   EXPRESSION OF DEGRADATIVE GENES OF PSEUDOMONAS-PUTIDA IN CAULOBACTER-CRESCENTUS [J].
CHATTERJEE, DK ;
CHATTERJEE, P .
JOURNAL OF BACTERIOLOGY, 1987, 169 (07) :2962-2966
[10]   Cell type-specific phosphorylation and proteolysis of a transcriptional regulator controls the G1-to-S transition in a bacterial cell cycle [J].
Domian, IJ ;
Quon, KC ;
Shapiro, L .
CELL, 1997, 90 (03) :415-424