Molecular evolution and the role of oxidative stress in the expansion and functional diversification of cytosolic glutathione transferases

被引:66
作者
da Fonseca, Rute R. [1 ]
Johnson, Warren E. [2 ]
O'Brien, Stephen J. [2 ]
Vasconcelos, Vitor [1 ,3 ]
Antunes, Agostinho [1 ,2 ]
机构
[1] Univ Porto, Ctr Interdisciplinar Invest Marinha & Ambiental, CIMAR CIIMAR, P-4050123 Oporto, Portugal
[2] NCI, Lab Genom Divers, Frederick, MD 21702 USA
[3] Univ Porto, Fac Ciencias, Dept Biol, Oporto, Portugal
来源
BMC EVOLUTIONARY BIOLOGY | 2010年 / 10卷
关键词
S-TRANSFERASE; POLYMORPHISMS; FAMILY; PHYLOGENIES; SELECTION; SEQUENCE; ENZYMES; GST;
D O I
10.1186/1471-2148-10-281
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Background: Cytosolic glutathione transferases (cGST) are a large group of ubiquitous enzymes involved in detoxification and are well known for their undesired side effects during chemotherapy. In this work we have performed thorough phylogenetic analyses to understand the various aspects of the evolution and functional diversification of cGSTs. Furthermore, we assessed plausible correlations between gene duplication and substrate specificity of gene paralogs in humans and selected species, notably in mammalian enzymes and their natural substrates. Results: We present a molecular phylogeny of cytosolic GSTs that shows that several classes of cGSTs are more ubiquitous and thus have an older ancestry than previously thought. Furthermore, we found that positive selection is implicated in the diversification of cGSTs. The number of duplicate genes per class is generally higher for groups of enzymes that metabolize products of oxidative damage. Conclusions: 1) Protection against oxidative stress seems to be the major driver of positive selection in mammalian cGSTs, explaining the overall expansion pattern of this subfamily; 2) Given the functional redundancy of GSTs that metabolize xenobiotic chemicals, we would expect the loss of gene duplicates, but by contrast we observed a gene expansion of this family, which likely has been favored by: i) the diversification of endogenous substrates; ii) differential tissue expression; and iii) increased specificity for a particular molecule; 3) The increased availability of sequence data from diversified taxa is likely to continue to improve our understanding of the early origin of the different cGST classes.
引用
收藏
页数:11
相关论文
共 48 条
[1]   ProtTest: selection of best-fit models of protein evolution [J].
Abascal, F ;
Zardoya, R ;
Posada, D .
BIOINFORMATICS, 2005, 21 (09) :2104-2105
[2]   Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-coffee [J].
Armougom, Fabrice ;
Moretti, Sebastien ;
Poirot, Olivier ;
Audic, Stephane ;
Dumas, Pierre ;
Schaeli, Basile ;
Keduas, Vladimir ;
Notredame, Cedric .
NUCLEIC ACIDS RESEARCH, 2006, 34 :W604-W608
[3]   Structure, catalytic mechanism, and evolution of the glutathione transferases [J].
Armstrong, RN .
CHEMICAL RESEARCH IN TOXICOLOGY, 1997, 10 (01) :2-18
[4]  
BOARD PG, 2005, METHOD ENZYMOL, P61
[5]   Relevance of the deletion polymorphisms of the glutathione S-transferases GSTT1 and GSTM1 in pharmacology and toxicology [J].
Bolt, H. M. ;
Thier, R. .
CURRENT DRUG METABOLISM, 2006, 7 (06) :613-628
[6]   Genetic polymorphisms of drug-metabolising enzymes and drug transporters in the chemotherapeutic treatment of cancer [J].
Bosch, TM ;
Meijerman, I ;
Beijnen, JH ;
Schellens, JHM .
CLINICAL PHARMACOKINETICS, 2006, 45 (03) :253-285
[7]  
Coles BF., 2005, HUMAN ALPHA CLASS GL, P9
[8]  
CRYSTAL S, 2001, BIOCHEMISTRY-US, V40, P1567
[9]   Structural divergence and adaptive evolution in mammalian cytochromes P4502C [J].
da Fonseca, Rute R. ;
Antunes, Agostinho ;
Melo, Andre ;
Ramos, Maria Joao .
GENE, 2007, 387 (1-2) :58-66
[10]   Positive selection on apoptosis related genes [J].
da Fonseca, Rute R. ;
Kosiol, Carolin ;
Vinar, Tomas ;
Siepel, Adam ;
Nielsen, Rasmus .
FEBS LETTERS, 2010, 584 (03) :469-476