What determines the folding of the chromatin fiber?

被引:161
作者
vanHolde, K [1 ]
Zlatanova, J [1 ]
机构
[1] BULGARIAN ACAD SCI, INST GENET, BU-1113 SOFIA, BULGARIA
关键词
D O I
10.1073/pnas.93.20.10548
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
In this review, we attempt to summarize, in a critical manner, what is currently known about the processes of condensation and decondensation of chromatin fibers, We begin with a critical analysis of the possible mechanisms for condensation, considering both old and new evidence as to whether the linker DNA between nucleosomes bends or remains straight in the condensed structure, Concluding that the preponderance of evidence is for straight linkers, we ask what other fundamental process might allow condensation, and argue that there is evidence for linker histone-induced contraction of the internucleosome angle, as salt concentration is raised toward physiological levels, We also ask how certain specific regions of chromatin can become decondensed, even at physiological salt concentration, to allow transcription, We consider linker histone depletion and acetylation of the core histone tails, as possible mechanisms, On the basis of recent evidence, we suggest a unified model linking targeted acetylation of specific genomic regions to linker histone depletion, with unfolding of the condensed fiber as a consequence.
引用
收藏
页码:10548 / 10555
页数:8
相关论文
共 68 条
[1]   REGULATION OF THE HIGHER-ORDER STRUCTURE OF CHROMATIN BY HISTONES-H1 AND HISTONES-H5 [J].
ALLAN, J ;
COWLING, GJ ;
HARBORNE, N ;
CATTINI, P ;
CRAIGIE, R ;
GOULD, H .
JOURNAL OF CELL BIOLOGY, 1981, 90 (02) :279-288
[2]   PARTICIPATION OF CORE HISTONE TAILS IN THE STABILIZATION OF THE CHROMATIN SOLENOID [J].
ALLAN, J ;
HARBORNE, N ;
RAU, DC ;
GOULD, H .
JOURNAL OF CELL BIOLOGY, 1982, 93 (02) :285-297
[3]   THE NUCLEOSOMAL CORE HISTONE OCTAMER AT 3.1-A RESOLUTION - A TRIPARTITE PROTEIN ASSEMBLY AND A LEFT-HANDED SUPERHELIX [J].
ARENTS, G ;
BURLINGAME, RW ;
WANG, BC ;
LOVE, WE ;
MOUDRIANAKIS, EN .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1991, 88 (22) :10148-10152
[4]   STRUCTURE OF NUCLEOSOMES AND ORGANIZATION OF INTERNUCLEOSOMAL DNA IN CHROMATIN [J].
BAVYKIN, SG ;
USACHENKO, SI ;
ZALENSKY, AO ;
MIRZABEKOV, AD .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 212 (03) :495-511
[5]   CHROMATIN CONFORMATION AND SALT-INDUCED COMPACTION - 3-DIMENSIONAL STRUCTURAL INFORMATION FROM CRYOELECTRON MICROSCOPY [J].
BEDNAR, J ;
HOROWITZ, RA ;
DUBOCHET, J ;
WOODCOCK, CL .
JOURNAL OF CELL BIOLOGY, 1995, 131 (06) :1365-1376
[6]   FRICTIONAL COEFFICIENTS OF MULTISUBUNIT STRUCTURES .1. THEORY [J].
BLOOMFIE.V ;
DALTON, WO ;
VANHOLDE, KE .
BIOPOLYMERS, 1967, 5 (02) :135-&
[7]   THE SUPERSTRUCTURE OF CHROMATIN AND ITS CONDENSATION MECHANISM .2. THEORETICAL-ANALYSIS OF THE X-RAY-SCATTERING PATTERNS AND MODEL-CALCULATIONS [J].
BORDAS, J ;
PEREZGRAU, L ;
KOCH, MHJ ;
VEGA, MC ;
NAVE, C .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 1986, 13 (03) :175-185
[8]   THE SUPERSTRUCTURE OF CHROMATIN AND ITS CONDENSATION MECHANISM .1. SYNCHROTRON RADIATION X-RAY-SCATTERING RESULTS [J].
BORDAS, J ;
PEREZGRAU, L ;
KOCH, MHJ ;
VEGA, MC ;
NAVE, C .
EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 1986, 13 (03) :157-173
[9]   Tetrahymena histone acetyltransferase A: A homolog to yeast Gcn5p linking histone acetylation to gene activation [J].
Brownell, JE ;
Zhou, JX ;
Ranalli, T ;
Kobayashi, R ;
Edmondson, DG ;
Roth, SY ;
Allis, CD .
CELL, 1996, 84 (06) :843-851
[10]   CHANGES IN CHROMATIN FOLDING IN SOLUTION [J].
BUTLER, PJG ;
THOMAS, JO .
JOURNAL OF MOLECULAR BIOLOGY, 1980, 140 (04) :505-529