A new crystal form of β-cyclodextrin-ethanol inclusion complex:: channel-type structure without long guest molecules

被引:31
作者
Aree, T
Chaichit, N
机构
[1] Chulalongkorn Univ, Fac Sci, Dept Chem, Bangkok 10330, Thailand
[2] Thammasat Univ, Fac Sci & Technol, Dept Phys, Pathum Thani 12121, Thailand
关键词
beta-cyclodextrin; ethanol inclusion complexes; crystal structures; X-ray analysis; hydrogen bond;
D O I
10.1016/S0008-6215(03)00220-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 [生物化学与分子生物学]; 081704 [应用化学];
摘要
A new crystal form of beta-cyclodextrin (beta-CD)-ethanol-dodecahydrate inclusion complex [(C6H10O5)(7).0.3C(2)H(5)OH.12H(2)O] belongs to monoclinic space group C2 (form II) with unit cell constants a = 19.292(1), b = 24.691(1), c = 15.884(1) Angstrom, beta = 109.35(1)degrees. The beta-CD macrocycle is more circular than that of the complex in space group P2(1) [form I: J. Am. Chem. Soc. 113 (1991) 5676]. In form II, a disordered ethanol molecule (occupancy 0.3) is placed in the upper part of beta-CD cavity (above the O-4 plane) and is sustained by hydrogen bonding to water site W-2. In form I, an ethanol molecule located below the O-4-plane is well ordered because it hydrogen bonds to surrounding O-3-H, O-6-H groups of the symmetry-related beta-CD molecules. In the crystal lattice of form I, beta-CD macrocycles are stacked in a typical herringbone cage structure. By contrast, the packing structure of form II is a head-to-head channel that is stabilized at both O-2/O-3 and O-6 sides of each beta-CD by direct O-CD...O-CD and indirect O-CD...O-W...(O-W)...O-CD hydrogen bonds. The 12 water molecules are disordered in 18 positions both inside the channel-like cavity of beta-CD dimer (W-1-W-6) and in the interstices between the beta-CD macrocycles (W-7-W-18). The latter forms a cluster that is hydrogen bonded together and to the neighboring beta-CD O-H groups. (C) 2003 Elsevier Science Ltd. All rights reserved.
引用
收藏
页码:1581 / 1589
页数:9
相关论文
共 25 条
[1]
Crystal structure of β-cyclodextrin-benzoic acid inclusion complex [J].
Aree, T ;
Chaichit, N .
CARBOHYDRATE RESEARCH, 2003, 338 (05) :439-446
[2]
Betzel C., 1983, Journal Inclusion Phenomena, V1, P181, DOI [10.1007/BF00656821, DOI 10.1007/BF00656821]
[3]
Structure and thermodynamics of α-, β-, and γ-cyclodextrin dimers.: Molecular dynamics studies of the solvent effect and free binding energies [J].
Bonnet, P ;
Jaime, C ;
Morin-Allory, L .
JOURNAL OF ORGANIC CHEMISTRY, 2002, 67 (24) :8602-8609
[4]
α, β, and γ-cyclodextrin dimers.: Molecular modeling studies by molecular mechanics and molecular dynamics simulations [J].
Bonnet, P ;
Jaime, C ;
Morin-Allory, L .
JOURNAL OF ORGANIC CHEMISTRY, 2001, 66 (03) :689-692
[5]
Structure of the β-cyclodextrin•p-hydroxybenzaldehyde inclusion complex in aqueous solution and in the crystalline state [J].
Braga, SS ;
Aree, T ;
Imamura, K ;
Vertut, P ;
Boal-Palheiros, I ;
Saenger, W ;
Teixeira-Dias, JJC .
JOURNAL OF INCLUSION PHENOMENA AND MACROCYCLIC CHEMISTRY, 2002, 43 (1-2) :115-125
[6]
BURNETT MN, 1996, ORTEP 3 THERMAL ELLI
[7]
*CAMBR CRYST DAT C, 2002, CAMBR STRUCT DAT
[8]
GENERAL DEFINITION OF RING PUCKERING COORDINATES [J].
CREMER, D ;
POPLE, JA .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1975, 97 (06) :1354-1358
[9]
SEARCH FOR A FRAGMENT OF KNOWN GEOMETRY BY INTEGRATED PATTERSON AND DIRECT METHODS [J].
EGERT, E ;
SHELDRICK, GM .
ACTA CRYSTALLOGRAPHICA SECTION A, 1985, 41 (MAY) :262-268
[10]
Kim HJ, 2002, B KOR CHEM SOC, V23, P427