Determination of the chemical potential using energy-biased sampling

被引:9
作者
Delgado-Buscalioni, R
De Fabritiis, G
Coveney, PV
机构
[1] Univ Nacl Educ Distancia, Fac Ciencias, Dept Ciencias & Tecn Fis Quim, Madrid 28040, Spain
[2] UCL, Dept Chem, Ctr Computat Sci, London WC1H 0AJ, England
基金
英国工程与自然科学研究理事会;
关键词
D O I
10.1063/1.2000244
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An energy-biased method to evaluate ensemble averages requiring test-particle insertion is presented. The method is based on biasing the sampling within the subdomains of the test-particle configurational space with energies smaller than a given value freely assigned. These energy wells are located via unbiased random insertion over the whole configurational space and are sampled using the so-called Hit-and-Run algorithm, which uniformly samples compact regions of any shape immersed in a space of arbitrary dimensions. Because the bias is defined in terms of the energy landscape it can be exactly corrected to obtain the unbiased distribution. The test-particle energy distribution is then combined with the Bennett relation for the evaluation of the chemical potential. We apply this protocol to a system with relatively small probability of low-energy test-particle insertion, liquid argon at high density and low temperature, and show that the energy-biased Bennett method is around five times more efficient than the standard Bennett method. A similar performance gain is observed in the reconstruction of the energy distribution. (C) 2005 American Institute of Physics.
引用
收藏
页数:9
相关论文
共 17 条
[1]  
Allen M. P., 1987, J COMPUTER SIMULATIO, DOI DOI 10.2307/2938686
[2]   EFFICIENT ESTIMATION OF FREE-ENERGY DIFFERENCES FROM MONTE-CARLO DATA [J].
BENNETT, CH .
JOURNAL OF COMPUTATIONAL PHYSICS, 1976, 22 (02) :245-268
[3]   Energy controlled insertion of polar molecules in dense fluids [J].
De Fabritiis, G ;
Delgado-Buscalioni, R ;
Coveney, PV .
JOURNAL OF CHEMICAL PHYSICS, 2004, 121 (24) :12139-12142
[4]   EFFICIENT MOLECULAR SIMULATION OF CHEMICAL-POTENTIALS [J].
DEITRICK, GL ;
SCRIVEN, LE ;
DAVIS, HT .
JOURNAL OF CHEMICAL PHYSICS, 1989, 90 (04) :2370-2385
[5]   USHER: An algorithm for particle insertion in dense fluids [J].
Delgado-Buscalioni, R ;
Coveney, PV .
JOURNAL OF CHEMICAL PHYSICS, 2003, 119 (02) :978-987
[6]  
Frenkel D., 2000, Computational Science Series
[7]   ON THE EXACT VARIANCE OF PRODUCTS [J].
GOODMAN, LA .
JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION, 1960, 55 (292) :708-713
[8]  
JARYNSKI C, 1997, PHYS REV LETT, V78, P2690
[9]   Calculation of the free energy profile of H2O, O2, CO, CO2, NO, and CHCl3 in a lipid bilayer with a cavity insertion variant of the Widom method [J].
Jedlovszky, P ;
Mezei, M .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (21) :5125-5131
[10]   FREE-ENERGY CALCULATIONS - APPLICATIONS TO CHEMICAL AND BIOCHEMICAL PHENOMENA [J].
KOLLMAN, P .
CHEMICAL REVIEWS, 1993, 93 (07) :2395-2417