51V NMR chemical shifts from quantum-mechanical/molecular-mechanical models of vanadium bromoperoxidase

被引:26
作者
Waller, Mark P. [1 ]
Geethalakshmi, K. R. [1 ]
Buehl, Michael [1 ]
机构
[1] Max Planck Inst Kohlenforsch, D-45470 Mulheim, Germany
关键词
D O I
10.1021/jp800580n
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
According to quantum-mechanical/molecular-mechanical (QM/MM) optimizations, the active-site geometries of vanadium-dependent bromoperoxidase (VBPO) and vanadium-dependent chloroperoxidase (VCPO) are very similar. V-51 NMR chemical shifts calculated from QM/MM-optimized models of VBPO are critically compared to VCPO and are found to be very similar for the two related proteins. The primary difference between these related structures, the presence of a His411 in VBPO whereas Phe397 is located at that position in VCPO, is studied via analysis of the respective theoretical V-51 NMR spectra. The long-range electrostatic effects from more distal residues are also studied to establish their effect. Similar results are obtained for the two active sites of the VBPO homodimer. The experimentally observed shielding of the isotropic V-51 NMR chemical shift on going from VCPO to VBPO is somewhat underestimated in the QM/MM models studied. NMR and NQC tensors of both enzymes are predicted to show noticeable differences, suggesting that precise solid-state V-51 NMR data, when they become available, can be a sensitive probe for subtle differences in structural details between these enzymes.
引用
收藏
页码:5813 / 5823
页数:11
相关论文
共 65 条
[1]   ELECTRONIC-STRUCTURE CALCULATIONS ON WORKSTATION COMPUTERS - THE PROGRAM SYSTEM TURBOMOLE [J].
AHLRICHS, R ;
BAR, M ;
HASER, M ;
HORN, H ;
KOLMEL, C .
CHEMICAL PHYSICS LETTERS, 1989, 162 (03) :165-169
[2]   Computing the NMR spectrum of a bulk ionic liquid phase by QM/MM methods [J].
Bagno, Alessandro ;
D'Amico, Fabio ;
Saielli, Giacomo .
JOURNAL OF PHYSICAL CHEMISTRY B, 2006, 110 (46) :23004-23006
[3]   SIMPSON: A general simulation program for solid-state NMR spectroscopy [J].
Bak, M ;
Rasmussen, JT ;
Nielsen, NC .
JOURNAL OF MAGNETIC RESONANCE, 2000, 147 (02) :296-330
[4]   Hybrid models for combined quantum mechanical and molecular mechanical approaches [J].
Bakowies, D ;
Thiel, W .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (25) :10580-10594
[5]   TD-DFT studies on the electronic structure of imidazole bound vanadate in vanadium containing haloperoxidases (VHPO) [J].
Bangesh, M ;
Plass, W .
JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2005, 725 (1-3) :163-175
[6]   DENSITY-FUNCTIONAL EXCHANGE-ENERGY APPROXIMATION WITH CORRECT ASYMPTOTIC-BEHAVIOR [J].
BECKE, AD .
PHYSICAL REVIEW A, 1988, 38 (06) :3098-3100
[7]   Relativistic effects for NMR shielding constants in transition metal oxides using the zeroth-order regular approximation [J].
Bouten, R ;
Baerends, EJ ;
van Lenthe, E ;
Visscher, L ;
Schreckenbach, G ;
Ziegler, T .
JOURNAL OF PHYSICAL CHEMISTRY A, 2000, 104 (23) :5600-5611
[8]  
Bühl M, 2001, CHEM-EUR J, V7, P4487, DOI 10.1002/1521-3765(20011015)7:20<4487::AID-CHEM4487>3.0.CO
[9]  
2-G
[10]   Peroxovanadate imidazole complexes as catalysts for olefin epoxidation:: Density functional study of dynamics, 51V NMR chemical shifts, and mechanism [J].
Bühl, M ;
Schurhammer, R ;
Imhof, P .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (10) :3310-3320