RETRACTED: Protein dynamics in living cells (Retracted article. See vol 46, pg 8206, 2007)

被引:39
作者
Bryant, JE
Lecomte, JTJ
Lee, AL
Young, GB
Pielak, GJ [1 ]
机构
[1] Univ N Carolina, Dept Chem & Biochem & Biophys, Div Med Chem & Nat Prod, Chapel Hill, NC 27599 USA
[2] Univ N Carolina, Lineberger Canc Res Ctr, Chapel Hill, NC 27599 USA
[3] Penn State Univ, Dept Chem, University Pk, PA 16802 USA
关键词
D O I
10.1021/bi050786j
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A protein's structure is most often used to explain its function, but function also depends on dynamics. To date, protein dynamics have been studied only in vitro under dilute solution conditions where solute concentrations are typically less than 10 g/L, yet proteins function in a crowded environment where the solute concentration can exceed 400 g/L. Does the intracellular environment affect protein dynamics? The answer will help in assessing the biological significance of the NMR-derived dynamics data collected to date. We investigated fast protein dynamics inside living Escherichia coli by using in-cell NMR. The backbone dynamics of apocytochrome b(5) were quantified using {H-1}-N-15 nuclear Overhauser effect (nOe) measurements, which characterize motions on the pico- to nanosecond time scale. The overall trend of backbone dynamics remains the same in cells. Some of the nOe values differ, but most of the differences track the increased intracellular viscosity rather than a change in dynamics. Therefore, it appears that dilute solution steady-state {H-1}-N-15 nOe measurements provide biologically relevant information about pico- to nanosecond backbone motion in proteins.
引用
收藏
页码:9275 / 9279
页数:5
相关论文
共 28 条
[1]   Backbone dynamics of apocytochrome b5 in its native, partially folded state [J].
Bhattacharya, S ;
Falzone, CJ ;
Lecomte, JTJ .
BIOCHEMISTRY, 1999, 38 (08) :2577-2589
[2]   CYTOPLASMIC VISCOSITY NEAR THE CELL PLASMA-MEMBRANE - MEASUREMENT BY EVANESCENT FIELD FREQUENCY-DOMAIN MICROFLUORIMETRY [J].
BICKNESE, S ;
PERIASAMY, N ;
SHOHET, SB ;
VERKMAN, AS .
BIOPHYSICAL JOURNAL, 1993, 65 (03) :1272-1282
[3]   NATURAL ABUNDANCE N-15 NMR BY ENHANCED HETERONUCLEAR SPECTROSCOPY [J].
BODENHAUSEN, G ;
RUBEN, DJ .
CHEMICAL PHYSICS LETTERS, 1980, 69 (01) :185-189
[4]   Interpreting the effects of small uncharged solutes on protein-folding equilibria [J].
Davis-Searles, PR ;
Saunders, AJ ;
Erie, DA ;
Winzor, DJ ;
Pielak, GJ .
ANNUAL REVIEW OF BIOPHYSICS AND BIOMOLECULAR STRUCTURE, 2001, 30 :271-306
[5]   FlgM gains structure in living cells [J].
Dedmon, MM ;
Patel, CN ;
Young, GB ;
Pielak, GJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (20) :12681-12684
[6]   NMRPIPE - A MULTIDIMENSIONAL SPECTRAL PROCESSING SYSTEM BASED ON UNIX PIPES [J].
DELAGLIO, F ;
GRZESIEK, S ;
VUISTER, GW ;
ZHU, G ;
PFEIFER, J ;
BAX, A .
JOURNAL OF BIOMOLECULAR NMR, 1995, 6 (03) :277-293
[7]   Cyclic enterobacterial common antigen: Potential contaminant of bacterially expressed protein preparations [J].
Erbel, PJA ;
Seidel, R ;
Macintosh, SE ;
Gentile, LN ;
Amor, JC ;
Kahn, RA ;
Prestegard, JH ;
McIntosh, LP ;
Gardner, KH .
JOURNAL OF BIOMOLECULAR NMR, 2004, 29 (02) :199-204
[8]   Design challenges for hemoproteins: The solution structure of apocytochrome b(5) [J].
Falzone, CJ ;
Mayer, MR ;
Whiteman, EL ;
Moore, CD ;
Lecomte, JTJ .
BIOCHEMISTRY, 1996, 35 (21) :6519-6526
[9]   Structural and dynamic perturbations induced by heme binding in cytochrome b5 [J].
Falzone, CJ ;
Wang, YM ;
Vu, BC ;
Scott, NL ;
Bhattacharya, S ;
Lecomte, JTJ .
BIOCHEMISTRY, 2001, 40 (15) :4879-4891
[10]   BACKBONE DYNAMICS OF A FREE AND A PHOSPHOPEPTIDE-COMPLEXED SRC HOMOLOGY-2 DOMAIN STUDIED BY N-15 NMR RELAXATION [J].
FARROW, NA ;
MUHANDIRAM, R ;
SINGER, AU ;
PASCAL, SM ;
KAY, CM ;
GISH, G ;
SHOELSON, SE ;
PAWSON, T ;
FORMANKAY, JD ;
KAY, LE .
BIOCHEMISTRY, 1994, 33 (19) :5984-6003