Group contributions to the solvation free energy from MST continuum calculations

被引:7
作者
Soteras, I
Morreale, A
López, JM
Orozco, M
Luque, FJ
机构
[1] Univ Barcelona, Dept Fisicoquim, Fac Farm, E-08028 Barcelona, Spain
[2] Inst Recerca Biomed, Mol Modelling & Bioinformat Unit, Barcelona 08028, Spain
[3] Univ Barcelona, Dept Bioquim & Biol Mol, Fac Quim, E-08028 Barcelona, Spain
关键词
D O I
10.1590/S0103-97332004000100008
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Group contributions to the free energy of solvation in water and octanol as well as to the octanol/water partition coefficient have been determined from Miertus-Scrocco-Tomasi continuum calculations. Particular attention is paid to the influence exerted by the procedure used to carry out the charge normalization in the MST model, as well as to the formalism of the partitioning scheme. A good agreement is found between the group contributions calculated by using different charge normalization and partitioning schemes in a series of structurally related drug-like molecule. Finally, the transferability of the group contributions determined for common chemical fragments along the series of molecules is discussed.
引用
收藏
页码:48 / 57
页数:10
相关论文
共 36 条
[1]  
[Anonymous], INTERMOLECULAR INTER
[2]   Rational Design of Reversible Acetylcholinesterase Inhibitors [J].
Barril, X. ;
Kalko, S. G. ;
Orozco, M. ;
Luque, F. J. .
MINI-REVIEWS IN MEDICINAL CHEMISTRY, 2002, 2 (01) :27-36
[3]   GROUP CONTRIBUTIONS TO THE THERMODYNAMIC PROPERTIES OF NON-IONIC ORGANIC SOLUTES IN DILUTE AQUEOUS-SOLUTION [J].
CABANI, S ;
GIANNI, P ;
MOLLICA, V ;
LEPORI, L .
JOURNAL OF SOLUTION CHEMISTRY, 1981, 10 (08) :563-595
[4]  
Cossi M, 1998, J COMPUT CHEM, V19, P833, DOI 10.1002/(SICI)1096-987X(199806)19:8<833::AID-JCC3>3.0.CO
[5]  
2-Q
[6]   Implicit solvation models: Equilibria, structure, spectra, and dynamics [J].
Cramer, CJ ;
Truhlar, DG .
CHEMICAL REVIEWS, 1999, 99 (08) :2161-2200
[7]  
CRAMER CJ, 1992, CHEM PHYS LETT, V74, P198
[8]  
Curutchet C, 2001, J COMPUT CHEM, V22, P1180, DOI 10.1002/jcc.1076
[9]   Prediction of hydrophobic (lipophilic) properties of small organic molecules using fragmental methods: An analysis of ALOGP and CLOGP methods [J].
Ghose, AK ;
Viswanadhan, VN ;
Wendoloski, JJ .
JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (21) :3762-3772
[10]  
HANSCH C, 1979, SUBSTITUENTS CONSTAN