Improved community detection in weighted bipartite networks

被引:331
作者
Beckett, Stephen J. [1 ,2 ]
机构
[1] Univ Exeter, Coll Life & Environm Sci, Biosci, Exeter EX4 4QE, Devon, England
[2] Georgia Inst Technol, Sch Biol, Atlanta, GA 30332 USA
来源
ROYAL SOCIETY OPEN SCIENCE | 2016年 / 3卷 / 01期
关键词
modular structure; network ecology; bipartite networks; modules; POLLINATION NETWORKS; MODULARITY; ECOLOGY; SPECIALIZATION; BIOLOGY;
D O I
10.1098/rsos.140536
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Real-world complex networks are composed of non-random quantitative interactions. Identifying communities of nodes that tend to interact more with each other than the network as a whole is a key research focus across multiple disciplines, yet many community detection algorithms only use information about the presence or absence of interactions between nodes. Weighted modularity is a potential method for evaluating the quality of community partitions in quantitative networks. In this framework, the optimal community partition of a network can be found by searching for the partition that maximizes modularity. Attempting to find the partition that maximizes modularity is a computationally hard problem requiring the use of algorithms. QuanBiMo is an algorithm that has been proposed to maximize weighted modularity in bipartite networks. This paper introduces two new algorithms, LPAwb+ and DIRTLPAwb+, for maximizing weighted modularity in bipartite networks. LPAwb+ and DIRTLPAwb+ robustly identify partitions with high modularity scores. DIRTLPAwb+ consistently matched or outperformed QuanBiMo, while the speed of LPAwb+ makes it an attractive choice for detecting the modularity of larger networks. Searching for modules using weighted data (rather than binary data) provides a different and potentially insightful method for evaluating network partitions.
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页数:18
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