Crystallization and preliminary crystallographic analysis of a family 43 β-D-xylosidase from Geobacillus stearothermophilus T-6

被引:4
作者
Brüx, C
Niefind, K
Ben-David, A
Leon, M
Shoham, G
Shoham, Y
Schomburg, D [1 ]
机构
[1] Univ Cologne, Inst Biochem, D-5000 Cologne, Germany
[2] Technion Israel Inst Technol, Dept Food Engn & Biotechnol, IL-32000 Haifa, Israel
[3] Technion Israel Inst Technol, Inst Catalysis Sci & Technol, IL-32000 Haifa, Israel
[4] Hebrew Univ Jerusalem, Dept Inorgan Chem, IL-91904 Jerusalem, Israel
[5] Hebrew Univ Jerusalem, Lab Struct Chem & Biol, IL-91904 Jerusalem, Israel
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2005年 / 61卷
关键词
D O I
10.1107/S1744309105036262
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
beta-D-Xylosidases (EC 3.2.1.37) are hemicellulases that cleave single xylose units from the nonreducing end of xylooligomers. In this study, the crystallization and preliminary X-ray analysis of a beta-D-xylosidase from Geobacillus stearothermophilus T-6 (XynB3), a family 43 glycoside hydrolase, is described. XynB3 is a 535-amino-acid protein with a calculated molecular weight of 61 891 Da. Purified recombinant native and catalytic inactive mutant proteins were crystallized and cocrystallized with xylobiose in two different space groups, P2(1)2(1)2 (unit-cell parameters a = 98.32, b = 99.36, c = 258.64 angstrom) and P4(1)2(1)2 ( or the enantiomorphic space group P4(3)2(1)2; unit-cell parameters a = b = 140.15, c = 233.11 angstrom), depending on the detergent. Transferring crystals to cryoconditions required a very careful protocol. Orthorhombic crystals diffract to 2.5 angstrom and tetragonal crystals to 2.2 angstrom.
引用
收藏
页码:1054 / 1057
页数:4
相关论文
共 30 条
[1]   The three-dimensional structure of invertase (β-fructosidase) from Thermotoga maritima reveals a bimodular arrangement and an evolutionary relationship between retaining and inverting glycosidases [J].
Alberto, F ;
Bignon, C ;
Sulzenbacher, G ;
Henrissat, B ;
Czjzek, M .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (18) :18903-18910
[2]   THE CCP4 SUITE - PROGRAMS FOR PROTEIN CRYSTALLOGRAPHY [J].
BAILEY, S .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :760-763
[3]   Microbial xylanases and their industrial applications: a review [J].
Beg, QK ;
Kapoor, M ;
Mahajan, L ;
Hoondal, GS .
APPLIED MICROBIOLOGY AND BIOTECHNOLOGY, 2001, 56 (3-4) :326-338
[4]   Detailed kinetic analysis of a family 52 glycoside hydrolase:: A β-xylosidase from Geobacillus stearothermophilus [J].
Bravman, T ;
Zolotnitsky, G ;
Belakhov, V ;
Shoham, G ;
Henrissat, B ;
Baasov, T ;
Shoham, Y .
BIOCHEMISTRY, 2003, 42 (35) :10528-10536
[5]   Identification of the catalytic residues in family 52 glycoside hydrolase, a β-xylosidase from Geobacillus stearothermophilus T-6 [J].
Bravman, T ;
Belakhov, V ;
Solomon, D ;
Shoham, G ;
Henrissat, B ;
Baasov, T ;
Shoham, Y .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (29) :26742-26749
[6]   Xylanases, xylanase families and extremophilic xylanases [J].
Collins, T ;
Gerday, C ;
Feller, G .
FEMS MICROBIOLOGY REVIEWS, 2005, 29 (01) :3-23
[7]   Enzyme-substrate complex structures of a GH39 β-xylosidase from Geobacillus stearothermophilus [J].
Czjzek, M ;
Ben David, A ;
Braman, T ;
Shoham, G ;
Henrissat, B ;
Shoham, Y .
JOURNAL OF MOLECULAR BIOLOGY, 2005, 353 (04) :838-846
[8]   Cryocooling of macromolecular crystals:: Optimization methods [J].
Garman, EF ;
Doublié, S .
MACROMOLECULAR CRYSTALLOGRAPHY, PT C, 2003, 368 :188-+
[9]   CLONING AND DNA-SEQUENCE OF THE GENE CODING FOR BACILLUS-STEAROTHERMOPHILUS T-6 XYLANASE [J].
GAT, O ;
LAPIDOT, A ;
ALCHANATI, I ;
REGUEROS, C ;
SHOHAM, Y .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 1994, 60 (06) :1889-1896
[10]   Crystal structures of Geobacillus stearothermophilus α-glucuronidase complexed with its substrate and products -: Mechanistic implications [J].
Golan, G ;
Shallom, D ;
Teplitsky, A ;
Zaide, G ;
Shulami, S ;
Baasov, T ;
Stojanoff, V ;
Thompson, A ;
Shoham, Y ;
Shoham, G .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2004, 279 (04) :3014-3024