Environmental signal integration by a modular AND gate

被引:258
作者
Anderson, J. Christopher
Voigt, Christopher A.
Arkin, Adam P.
机构
[1] Univ Calif San Francisco, Dept Pharmaceut Chem, QB3 Calif Inst Quantitat Biol Res, San Francisco, CA 94158 USA
[2] Univ Calif Berkeley, Lawrence Berkeley Natl Lab, Howard Hughes Med Inst,Phys Biosci Div, Dept Bioengn,QB3 Calif Inst Quantitat Biol Res, Berkeley, CA 94720 USA
关键词
genetic circuit; logic gate; signal integration; synthetic biology; ESCHERICHIA-COLI K-12; MOLECULAR CHARACTERIZATION; MAMMALIAN-CELLS; GENE-EXPRESSION; IDENTIFICATION; NETWORKS; BACTERIA; SYSTEM; EVOLUTION; BIOLOGY;
D O I
10.1038/msb4100173
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Microorganisms use genetic circuits to integrate environmental information. We have constructed a synthetic AND gate in the bacterium Escherichia coli that integrates information from two promoters as inputs and activates a promoter output only when both input promoters are transcriptionally active. The integration occurs via an interaction between an mRNA and tRNA. The first promoter controls the transcription of a T7 RNA polymerase gene with two internal amber stop codons blocking translation. The second promoter controls the amber suppressor tRNA supD. When both components are transcribed, T7 RNA polymerase is synthesized and this in turn activates a T7 promoter. Because inputs and outputs are promoters, the design is modular; that is, it can be reconnected to integrate different input signals and the output can be used to drive different cellular responses. We demonstrate this modularity by wiring the gate to integrate natural promoters (responding to Mg2+ and AI-1) and using it to implement a phenotypic output (invasion of mammalian cells). A mathematical model of the transfer function is derived and parameterized using experimental data.
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页数:8
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共 33 条
  • [1] Collaborative signaling by mixed chemoreceptor teams in Escherichia coli
    Ames, P
    Studdert, CA
    Reiser, RH
    Parkinson, JS
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (10) : 7060 - 7065
  • [2] Environmentally controlled invasion of cancer cells by engineered bacteria
    Anderson, JC
    Clarke, EJ
    Arkin, AP
    Voigt, CA
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2006, 355 (04) : 619 - 627
  • [3] Exploring the limits of codon and anticodon size
    Anderson, JC
    Magliery, TJ
    Schultz, PG
    [J]. CHEMISTRY & BIOLOGY, 2002, 9 (02): : 237 - 244
  • [4] ANDRIANANTOANDR.E, 2006, MOL SYST BIOL, V2
  • [5] Bacterially speaking
    Bassler, BL
    Losick, R
    [J]. CELL, 2006, 125 (02) : 237 - 246
  • [6] A synthetic multicellular system for programmed pattern formation
    Basu, S
    Gerchman, Y
    Collins, CH
    Arnold, FH
    Weiss, R
    [J]. NATURE, 2005, 434 (7037) : 1130 - 1134
  • [7] Spatiotemporal control of gene expression with pulse-generating networks
    Basu, S
    Mehreja, R
    Thiberge, S
    Chen, MT
    Weiss, R
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (17) : 6355 - 6360
  • [8] The complete genome sequence of Escherichia coli K-12
    Blattner, FR
    Plunkett, G
    Bloch, CA
    Perna, NT
    Burland, V
    Riley, M
    ColladoVides, J
    Glasner, JD
    Rode, CK
    Mayhew, GF
    Gregor, J
    Davis, NW
    Kirkpatrick, HA
    Goeden, MA
    Rose, DJ
    Mau, B
    Shao, Y
    [J]. SCIENCE, 1997, 277 (5331) : 1453 - +
  • [9] Programming and engineering biological networks
    Chin, Jason W.
    [J]. CURRENT OPINION IN STRUCTURAL BIOLOGY, 2006, 16 (04) : 551 - 556
  • [10] Reprogramming control of an allosteric signaling switch through modular recombination
    Dueber, JE
    Yeh, BJ
    Chak, K
    Lim, WA
    [J]. SCIENCE, 2003, 301 (5641) : 1904 - 1908