The distribution of deleterious genetic variation in human populations

被引:113
作者
Lohmueller, Kirk E. [1 ]
机构
[1] Univ Calif Los Angeles, Dept Ecol & Evolutionary Biol, Interdept Program Bioinformat, Los Angeles, CA 90095 USA
关键词
MUTATION LOAD; MOLECULAR EVOLUTION; CODING VARIATION; NEUTRAL THEORY; FITNESS; GENOME; ACCUMULATION; CONSTRAINT; ABUNDANCE; INFERENCE;
D O I
10.1016/j.gde.2014.09.005
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Population genetic studies suggest that most amino-acid changing mutations are deleterious. Such mutations are of tremendous interest in human population genetics as they are important for the evolutionary process and may contribute risk to common disease. Genomic studies over the past 5 years have documented differences across populations in the number of heterozygous deleterious genotypes, number of homozygous derived deleterious genotypes, number of deleterious segregating sites and proportion of sites that are potentially deleterious. These differences have been attributed to population history affecting the ability of natural selection to remove deleterious variants from the population. However, recent studies have suggested that the genetic load is the same across populations and that the efficacy of natural selection has not differed across human populations. Here I show that these observations are not incompatible with each other and that the apparent differences are due to examining different features of the genetic data and differing definitions of terms.
引用
收藏
页码:139 / 146
页数:8
相关论文
共 45 条
[1]   Mutation Load: The Fitness of Individuals in Populations Where Deleterious Alleles Are Abundant [J].
Agrawal, Aneil F. ;
Whitlock, Michael C. .
ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 43, 2012, 43 :115-+
[2]   Weak Selection and Protein Evolution [J].
Akashi, Hiroshi ;
Osada, Naoki ;
Ohta, Tomoko .
GENETICS, 2012, 192 (01) :15-U43
[3]   Assessing the evolutionary impact of amino acid mutations in the human genome [J].
Boyko, Adam R. ;
Williamson, Scott H. ;
Indap, Amit R. ;
Degenhardt, Jeremiah D. ;
Hernandez, Ryan D. ;
Lohmueller, Kirk E. ;
Adams, Mark D. ;
Schmidt, Steffen ;
Sninsky, John J. ;
Sunyaev, Shamil R. ;
White, Thomas J. ;
Nielsen, Rasmus ;
Clark, Andrew G. ;
Bustamante, Carlos D. .
PLOS GENETICS, 2008, 4 (05)
[4]   Genomic Identification of Founding Haplotypes Reveals the History of the Selfing Species Capsella rubella [J].
Brandvain, Yaniv ;
Slotte, Tanja ;
Hazzouri, Khaled M. ;
Wright, Stephen I. ;
Coop, Graham .
PLOS GENETICS, 2013, 9 (09)
[5]   African genetic diversity: Implications for human demographic history, modern human origins, and complex disease mapping [J].
Campbell, Michael C. ;
Tishkoff, Sarah A. .
ANNUAL REVIEW OF GENOMICS AND HUMAN GENETICS, 2008, 9 :403-433
[6]   Whole-Exome Sequencing Reveals a Rapid Change in the Frequency of Rare Functional Variants in a Founding Population of Humans [J].
Casals, Ferran ;
Hodgkinson, Alan ;
Hussin, Julie ;
Idaghdour, Youssef ;
Bruat, Vanessa ;
de Maillard, Thibault ;
Grenier, Jean-Cristophe ;
Gbeha, Elias ;
Hamdan, Fadi F. ;
Girard, Simon ;
Spinella, Jean-francois ;
Lariviere, Mathieu ;
Saillour, Virginie ;
Healy, Jasmine ;
Fernandez, Isabel ;
Sinnett, Daniel ;
Michaud, Jacques L. ;
Rouleau, Guy A. ;
Haddad, Elie ;
Le Desit, Francoise ;
Awadalla, Philip .
PLOS GENETICS, 2013, 9 (09)
[7]   Patterns of coding variation in the complete exomes of three Neandertals [J].
Castellano, Sergi ;
Parra, Genis ;
Sanchez-Quinto, Federico A. ;
Racimo, Fernando ;
Kuhlwilm, Martin ;
Kircher, Martin ;
Sawyer, Susanna ;
Fu, Qiaomei ;
Heinze, Anja ;
Nickel, Birgit ;
Dabney, Jesse ;
Siebauer, Michael ;
White, Louise ;
Burbano, Hernan A. ;
Renaud, Gabriel ;
Stenzel, Udo ;
Lalueza-Fox, Carles ;
de la Rasilla, Marco ;
Rosas, Antonio ;
Rudan, Pavao ;
Brajkovic, Dejana ;
Kucan, Zeljko ;
Gusic, Ivan ;
Shunkov, Michael V. ;
Derevianko, Anatoli P. ;
Viola, Bence ;
Meyer, Matthias ;
Kelso, Janet ;
Andres, Aida M. ;
Paeaebo, Svante .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (18) :6666-6671
[8]  
Charlesworth B., 2010, Elements of Evolutionary Genetics
[9]   Deep resequencing reveals excess rare recent variants consistent with explosive population growth [J].
Coventry, Alex ;
Bull-Otterson, Lara M. ;
Liu, Xiaoming ;
Clark, Andrew G. ;
Maxwell, Taylor J. ;
Crosby, Jacy ;
Hixson, James E. ;
Rea, Thomas J. ;
Muzny, Donna M. ;
Lewis, Lora R. ;
Wheeler, David A. ;
Sabo, Aniko ;
Lusk, Christine ;
Weiss, Kenneth G. ;
Akbar, Humeira ;
Cree, Andrew ;
Hawes, Alicia C. ;
Newsham, Irene ;
Varghese, Robin T. ;
Villasana, Donna ;
Gross, Shannon ;
Joshi, Vandita ;
Santibanez, Jireh ;
Morgan, Margaret ;
Chang, Kyle ;
Hale, Walker ;
Templeton, Alan R. ;
Boerwinkle, Eric ;
Gibbs, Richard ;
Sing, Charles F. .
NATURE COMMUNICATIONS, 2010, 1
[10]  
Do R, 2014, 2014ARXIV14024896