B3LYP/6-311++G** study of monohydrates of α- and β-D-glucopyranose:: hydrogen bonding, stress energies, and effect of hydration on internal coordinates

被引:77
作者
Momany, FA [1 ]
Appell, M [1 ]
Strati, G [1 ]
Willett, JL [1 ]
机构
[1] USDA ARS, Natl Ctr Agr Utilizat Res, Peoria, IL 61604 USA
关键词
B3LYP/6-311++G**; glucose; monohydrate; entropy; enthalpy; hydrogen bonding; relative free energy;
D O I
10.1016/j.carres.2003.10.013
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Twenty-six monohydrates of alpha- and beta-D-glucopyranose were studied using gradient methods at the B3LYP/6-311++G** level of theory. Geometry optimization was carried out with the water molecules at different configurations around the glucose molecule. A new nomenclature for hydrated carbohydrates was developed to describe the water configurations. Zero-point vibrational energy, enthalpy, entropy, and relative free energy were obtained using the harmonic approximation. Hydrogen-bond energies for the monohydrates range from similar to-5 to -12 kcal/mol, and the average relative free energy is similar to5 kcal/mol. The 1-hydroxy position is the most energetically favored site for hydration, and the region between the two and three positions is the next-most favored site. A water molecule approaching alpha-D-glucose between the 1- and 2-hydroxy positions pulls the 2-hydroxyl hydrogen atom away from the 1-hydroxy oxygen atom, thus increasing the hydrogen-bond length and also increasing the a-D-glucose energy. The increase in energy that occurs with a similar interaction on the beta-anomer is much less effective since the hydrogen bond is much longer. Using the calculated free energies of all 26 configurations, the anomer population (alpha/beta) increases in the beta-anomer population relative to the in vacuo case by similar to10% at the expense of the alpha-anomer, giving an (alpha/beta) ratio of similar to50/50. This result arises from entropy contributions favoring the beta-anomer more than the alpha-anomer. From analysis of donor and acceptor hydrogen-bond lengths, excellent correlation is found between the DFT calculated distances and those taken from carbohydrate structures in the Cambridge Crystallographic Data Bank. Published by Elsevier Ltd.
引用
收藏
页码:553 / 567
页数:15
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