Lights, camera, action: high-throughput plant phenotyping is ready for a close-up

被引:443
作者
Fahlgren, Noah [1 ]
Gehan, Malia A. [1 ]
Baxter, Ivan [2 ]
机构
[1] Donald Danforth Plant Sci Ctr, St Louis, MO 63132 USA
[2] ARS, USDA, Donald Danforth Plant Sci Ctr, Washington, DC USA
基金
美国国家科学基金会;
关键词
NATURAL GENETIC-VARIATION; CHLOROPHYLL FLUORESCENCE; ARABIDOPSIS-THALIANA; ANALYSIS PLATFORM; LEAF GROWTH; TOLERANCE; PHENOMICS; VISION;
D O I
10.1016/j.pbi.2015.02.006
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
Anticipated population growth, shifting demographics, and environmental variability over the next century are expected to threaten global food security. In the face of these challenges, crop yield for food and fuel must be maintained and improved using fewer input resources. In recent years, genetic tools for profiling crop germplasm has benefited from rapid advances in DNA sequencing, and now similar advances are needed to improve the throughput of plant phenotyping. We highlight recent developments in high-throughput plant phenotyping using robotic-assisted imaging platforms and computer vision-assisted analysis tools.
引用
收藏
页码:93 / 99
页数:7
相关论文
共 55 条
[1]   The Economic Returns to U.S. Public Agricultural Research [J].
Alston, Julian M. ;
Andersen, Matthew A. ;
James, Jennifer S. ;
Pardey, Philip G. .
AMERICAN JOURNAL OF AGRICULTURAL ECONOMICS, 2011, 93 (05) :1257-1277
[2]  
[Anonymous], J EXP BOT
[3]  
[Anonymous], PLANT CELL
[4]   Chlorophyll fluorescence: A probe of photosynthesis in vivo [J].
Baker, Neil R. .
ANNUAL REVIEW OF PLANT BIOLOGY, 2008, 59 :89-113
[5]   NCBI GEO: archive for functional genomics data sets-update [J].
Barrett, Tanya ;
Wilhite, Stephen E. ;
Ledoux, Pierre ;
Evangelista, Carlos ;
Kim, Irene F. ;
Tomashevsky, Maxim ;
Marshall, Kimberly A. ;
Phillippy, Katherine H. ;
Sherman, Patti M. ;
Holko, Michelle ;
Yefanov, Andrey ;
Lee, Hyeseung ;
Zhang, Naigong ;
Robertson, Cynthia L. ;
Serova, Nadezhda ;
Davis, Sean ;
Soboleva, Alexandra .
NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) :D991-D995
[6]  
[Barros V.R. IPCC. IPCC.], 2014, CONTRIBUTION WORKING
[7]   Image-Based High-Throughput Field Phenotyping of Crop Roots [J].
Bucksch, Alexander ;
Burridge, James ;
York, Larry M. ;
Das, Abhiram ;
Nord, Eric ;
Weitz, Joshua S. ;
Lynch, Jonathan P. .
PLANT PHYSIOLOGY, 2014, 166 (02) :470-486
[8]   On the use of depth camera for 3D phenotyping of entire plants [J].
Chene, Yann ;
Rousseau, David ;
Lucidarme, Philippe ;
Bertheloot, Jessica ;
Caffier, Valerie ;
Morel, Philippe ;
Belin, Etienne ;
Chapeau-Blondeau, Francois .
COMPUTERS AND ELECTRONICS IN AGRICULTURE, 2012, 82 :122-127
[9]   Multiscale digital Arabidopsis predicts individual organ and whole-organism growth [J].
Chew, Yin Hoon ;
Wenden, Benedicte ;
Flis, Anna ;
Mengin, Virginie ;
Taylor, Jasper ;
Davey, Christopher L. ;
Tindal, Christopher ;
Thomas, Howard ;
Ougham, Helen J. ;
de Reffye, Philippe ;
Stitt, Mark ;
Williams, Mathew ;
Muetzelfeldt, Robert ;
Halliday, Karen J. ;
Millar, Andrew J. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (39) :E4127-E4136
[10]   Imitation, Genetic Lineages, and Time Influenced the Morphological Evolution of the Violin [J].
Chitwood, Daniel H. .
PLOS ONE, 2014, 9 (10)