H3K4 demethylation by Jarid1a and Jarid1b contributes to retinoblastoma-mediated gene silencing during cellular senescence

被引:136
作者
Chicas, Agustin [3 ,5 ]
Kapoor, Avnish [1 ,2 ]
Wang, Xiaowo [6 ,7 ]
Aksoy, Ozlem [3 ,5 ]
Evertts, Adam G. [9 ]
Zhang, Michael Q. [6 ,7 ,8 ]
Garcia, Benjamin A. [9 ]
Bernstein, Emily [1 ,2 ]
Lowe, Scott W. [3 ,4 ,5 ]
机构
[1] Mt Sinai Sch Med, Dept Oncol Sci, New York, NY 10029 USA
[2] Mt Sinai Sch Med, Dept Dermatol, New York, NY 10029 USA
[3] Cold Spring Harbor Lab, Cold Spring Harbor, NY 11724 USA
[4] Mem Sloan Kettering Canc Ctr, Howard Hughes Med Inst, New York, NY 10065 USA
[5] Mem Sloan Kettering Canc Ctr, Canc Biol & Genet Program, New York, NY 10065 USA
[6] Tsinghua Univ, Dept Automat, Tsinghua Natl Lab Informat Sci & Technol, Bioinformat Div, Beijing 100084, Peoples R China
[7] Tsinghua Univ, Minist Educ, Key Lab Bioinformat, Beijing 100084, Peoples R China
[8] Univ Texas Dallas, Ctr Syst Biol, Dept Mol & Cell Biol, Richardson, TX 75080 USA
[9] Princeton Univ, Dept Mol Biol, Princeton, NJ 08544 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
H3K4me3; histone demethylase; CELLS; BINDING;
D O I
10.1073/pnas.1119836109
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
070301 [无机化学]; 070403 [天体物理学]; 070507 [自然资源与国土空间规划学]; 090105 [作物生产系统与生态工程];
摘要
Cellular senescence is a tumor-suppressive program that involves chromatin reorganization and specific changes in gene expression that trigger an irreversible cell-cycle arrest. Here we combine quantitative mass spectrometry, ChIP deep-sequencing, and functional studies to determine the role of histone modifications on chromatin structure and gene-expression alterations associated with senescence in primary human cells. We uncover distinct senescence-associated changes in histone-modification patterns consistent with a repressive chromatin environment and link the establishment of one of these patterns-loss of H3K4 methylation-to the retinoblastoma tumor suppressor and the H3K4 demethylases Jarid1a and Jarid1b. Our results show that Jarid1a/b-mediated H3K4 demethylation contributes to silencing of retinoblastoma target genes in senescent cells, suggesting a mechanism by which retinoblastoma triggers gene silencing. Therefore, we link the Jarid1a and Jarid1b demethylases to a tumor-suppressor network controlling cellular senescence.
引用
收藏
页码:8971 / 8976
页数:6
相关论文
共 27 条
[1]
Clearance of p16Ink4a-positive senescent cells delays ageing-associated disorders [J].
Baker, Darren J. ;
Wijshake, Tobias ;
Tchkonia, Tamar ;
LeBrasseur, Nathan K. ;
Childs, Bennett G. ;
van de Sluis, Bart ;
Kirkland, James L. ;
van Deursen, Jan M. .
NATURE, 2011, 479 (7372) :232-U112
[2]
High-resolution profiling of histone methylations in the human genome [J].
Barski, Artern ;
Cuddapah, Suresh ;
Cui, Kairong ;
Roh, Tae-Young ;
Schones, Dustin E. ;
Wang, Zhibin ;
Wei, Gang ;
Chepelev, Iouri ;
Zhao, Keji .
CELL, 2007, 129 (04) :823-837
[3]
Binding of pRB to the PHD protein RBP2 promotes cellular differentiation [J].
Benevolenskaya, EV ;
Murray, HL ;
Branton, P ;
Young, RA ;
Kaelin, WG .
MOLECULAR CELL, 2005, 18 (06) :623-635
[4]
CONTROLLING THE FALSE DISCOVERY RATE - A PRACTICAL AND POWERFUL APPROACH TO MULTIPLE TESTING [J].
BENJAMINI, Y ;
HOCHBERG, Y .
JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY, 1995, 57 (01) :289-300
[5]
Retinoblastoma protein recruits histone deacetylase to repress transcription [J].
Brehm, A ;
Miska, EA ;
McCance, DJ ;
Reid, JL ;
Bannister, AJ ;
Kouzarides, T .
NATURE, 1998, 391 (6667) :597-601
[6]
Cellular senescence: when bad things happen to good cells [J].
Campisi, Judith ;
di Fagagna, Fabrizio d'Adda .
NATURE REVIEWS MOLECULAR CELL BIOLOGY, 2007, 8 (09) :729-740
[7]
Dissecting the Unique Role of the Retinoblastoma Tumor Suppressor during Cellular Senescence [J].
Chicas, Agustin ;
Wang, Xiaowo ;
Zhang, Chaolin ;
McCurrach, Mile ;
Zhao, Zhen ;
Mert, Ozlem ;
Dickins, Ross A. ;
Narita, Masashi ;
Zhang, Michael ;
Lowe, Scott W. .
CANCER CELL, 2010, 17 (04) :376-387
[8]
Control of the senescence-associated secretory phenotype by NF-κB promotes senescence and enhances chemosensitivity [J].
Chien, Yuchen ;
Scuoppo, Claudio ;
Wang, Xiaowo ;
Fang, Xueping ;
Balgley, Brian ;
Bolden, Jessica E. ;
Premsrirut, Prem ;
Luo, Weijun ;
Chicas, Agustin ;
Lee, Cheng S. ;
Kogan, Scott C. ;
Lowe, Scott W. .
GENES & DEVELOPMENT, 2011, 25 (20) :2125-2136
[9]
RBP2 belongs to a family of demethylases, specific for tri- and dimethylated lysine 4 on histone 3 [J].
Christensen, Jesper ;
Agger, Karl ;
Cloos, Paul A. C. ;
Pasini, Diego ;
Rose, Simon ;
Sennels, Lau ;
Rappsilber, Juri ;
Hansen, Klaus H. ;
Salcini, Anna Elisabetta ;
Helin, Kristian .
CELL, 2007, 128 (06) :1063-1076
[10]
SENESCENCE Senescence in tumours: evidence from mice and humans [J].
Collado, Manuel ;
Serrano, Manuel .
NATURE REVIEWS CANCER, 2010, 10 (01) :51-57