PhyloBLAST: facilitating phylogenetic analysis of BLAST results

被引：20

作者：

Brinkman, FSL

Wan, I

Hancock, REW

Rose, AM

Jones, SJ ^{[1
]}

机构：

[1] British Columbia Canc Agcy, Genome Sequence Ctr, Vancouver, BC V5Z 4E6, Canada

[2] Univ British Columbia, Dept Microbiol & Immunol, Vancouver, BC V6T 1Z3, Canada

[3] Univ British Columbia, Dept Med Genet, Vancouver, BC V6H 3N1, Canada

来源：

BIOINFORMATICS | 2001年 / 17卷 / 04期

关键词：

D O I：

10.1093/bioinformatics/17.4.385

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

PhyloBLAST is an internet-accessed application based on CGI/Perl programming that compares a users protein sequence to a SwissProt/TREMBL database using BLAST2 and then allows phylogenetic analyses to be performed on selected sequences from the BLAST output. Flexible features such as ability to input your own multiple sequence alignment and use PHYLIP program options provide additional web-based phylogenetic analysis functionality beyond the analysis of a BLAST result.

引用

页码：385 / 387

页数：3

共 8 条

[1] ALTSCHUL SF, 1990, J MOL BIOL, V215, P403, DOI 10.1006/jmbi.1990.9999
[2] Etzold T, 1996, METHOD ENZYMOL, V266, P114
[3] Felsenstein J., 1989, CLADISTICS, V5, P164, DOI DOI 10.1111/J.1096-0031.1989.TB00562.X
[4] WebPHYLIP: a web interface to PHYLIP
Lim, A
Zhang, LX
[J]. BIOINFORMATICS, 1999, 15 (12) : 1068 - 1069
[5] Microbial genome analyses: Global comparisons of transport capabilities based on phylogenies, bioenergetics and substrate specificities
Paulsen, IT
Sliwinski, MK
Saier, MH
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1998, 277 (03) : 573 - 592
[6] Saitou N, 1996, METHOD ENZYMOL, V266, P427
[7] CLUSTAL-W - IMPROVING THE SENSITIVITY OF PROGRESSIVE MULTIPLE SEQUENCE ALIGNMENT THROUGH SEQUENCE WEIGHTING, POSITION-SPECIFIC GAP PENALTIES AND WEIGHT MATRIX CHOICE
THOMPSON, JD
HIGGINS, DG
GIBSON, TJ
[J]. NUCLEIC ACIDS RESEARCH, 1994, 22 (22) : 4673 - 4680
[8] Towards detection of orthologues in sequence databases
Yuan, YP
Eulenstein, O
Vingron, M
Bork, P
[J]. BIOINFORMATICS, 1998, 14 (03) : 285 - 289

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