Paper II - Dirt, dates and DNA: OSL and radiocarbon chronologies of perennially frozen sediments in Siberia, and their implications for sedimentary ancient DNA studies

被引:46
作者
Arnold, Lee J. [1 ,2 ]
Roberts, Richard G. [1 ]
Macphee, Ross D. E. [3 ]
Haile, James S. [4 ]
Brock, Fiona [5 ]
Moller, Per [6 ]
Froese, Duane G. [7 ]
Tikhonov, Alexei N. [8 ]
Chivas, Allan R. [1 ,9 ]
Gilbert, M. Thomas P. [4 ]
Willerslev, Eske [4 ]
机构
[1] Univ Wollongong, Ctr Archaeol Sci, Sch Earth & Environm Sci, Wollongong, NSW 2522, Australia
[2] CENIEH, Ctr Nacl Invest Evoluc Humana, Burgos 09002, Spain
[3] Amer Museum Nat Hist, Div Vertebrate Zool, New York, NY 10024 USA
[4] Univ Copenhagen, Ctr GeoGenet, DK-2100 Copenhagen, Denmark
[5] Univ Oxford, Oxford Radiocarbon Accelerator Unit, Res Lab Archaeol & Hist Art, Oxford OX1 3QY, England
[6] Lund Univ, Dept Earth & Ecosyst Sci, Div Geology Quaternary Sci, SE-22362 Lund, Sweden
[7] Univ Alberta, Dept Earth & Atmospher Sci, Edmonton, AB T5M 0M3, Canada
[8] Russian Acad Sci, Lab Mammals, Inst Zool, St Petersburg 199034, Russia
[9] Univ Wollongong, GeoQuEST Res Ctr, Wollongong, NSW 2522, Australia
基金
美国国家科学基金会; 澳大利亚研究理事会; 英国艺术与人文研究理事会; 新加坡国家研究基金会; 英国惠康基金;
关键词
YUKON-TERRITORY; MULTIPLE GRAINS; ANIMAL DNA; LUMINESCENCE; SINGLE; QUARTZ; EXTINCTION; ADSORPTION; PERMAFROST; HOLOCENE;
D O I
10.1111/j.1502-3885.2010.00181.x
中图分类号
P9 [自然地理学];
学科分类号
0705 ; 070501 ;
摘要
The sedimentary ancient DNA (sedaDNA) technique offers a potentially invaluable means of investigating species evolution and extinction dynamics in high-latitude environments. An implicit assumption of the sedaDNA approach is that the extracted DNA is autochthonous with the host deposit and that it has not been physically transported from older source deposits or reworked within the sedimentary profile by postdepositional mixing. In this paper we investigate whether these fundamental conditions are upheld at seven perennially frozen wetland sites across the Taimyr Peninsula and coastal lowlands of north-central Siberia. Optically stimulated luminescence (OSL) and radiocarbon (C-14) dating are used to constrain the ages of both the inorganic and organic fractions of perennially frozen deposits from which sedaDNA of extinct and extant species have been recovered. OSL and C-14 age/depth profiles, as well as single-grain equivalent dose (De) distribution characteristics, are used to assess the stratigraphic integrity of these sedaDNA sequences by (i) identifying the presence of primary or reworked organic and inorganic material, and (ii) examining the types of depositional and postdepositional processes that have affected specific sedimentary facies. The results of this study demonstrate that even though DNA preservation and stratigraphic integrity are commonly superior in perennially frozen settings, this does not, in itself, guarantee the suitability of the sedaDNA approach. The combined OSL and C-14 chronologies reveal that certain perennially frozen sites may be poorly suited for sedaDNA analysis, and that careful site selection is paramount to ensuring the accuracy of any sedaDNA study - particularly for 'latest appearance date' estimates of extinct taxa.
引用
收藏
页码:417 / 445
页数:29
相关论文
共 66 条
[41]   Luminescence dating of quartz using an improved single-aliquot regenerative-dose protocol [J].
Murray, AS ;
Wintle, AG .
RADIATION MEASUREMENTS, 2000, 32 (01) :57-73
[42]   Tree-ring growth curves as sources of climatic information [J].
Naurzbaev, MM ;
Hughes, MK ;
Vaganov, EA .
QUATERNARY RESEARCH, 2004, 62 (02) :126-133
[43]   Summer temperatures in eastern Taimyr inferred from a 2427-year late-Holocene tree-ring chronology and earlier floating series [J].
Naurzbaev, MM ;
Vaganov, EA ;
Sidorova, OV ;
Schweingruber, FH .
HOLOCENE, 2002, 12 (06) :727-736
[44]   Climate change, humans, and the extinction of the woolly mammoth [J].
Nogues-Bravo, David ;
Rodriguez, Jesus ;
Hortal, Joaquin ;
Batra, Persaram ;
Araujo, Miguel B. .
PLOS BIOLOGY, 2008, 6 (04) :685-692
[45]   DNA ADSORPTION TO SOILS AND SEDIMENTS [J].
OGRAM, A ;
SAYLER, GS ;
GUSTIN, D ;
LEWIS, RJ .
ENVIRONMENTAL SCIENCE & TECHNOLOGY, 1988, 22 (08) :982-984
[46]   One-step generation of degraded DNA by UV irradiation [J].
Pang, B. C. M. ;
Cheung, B. K. K. .
ANALYTICAL BIOCHEMISTRY, 2007, 360 (01) :163-165
[47]   COSMIC-RAY CONTRIBUTIONS TO DOSE-RATES FOR LUMINESCENCE AND ESR DATING - LARGE DEPTHS AND LONG-TERM TIME VARIATIONS [J].
PRESCOTT, JR ;
HUTTON, JT .
RADIATION MEASUREMENTS, 1994, 23 (2-3) :497-500
[48]  
Ramsey CB, 2001, RADIOCARBON, V43, P355
[49]   BAYESIAN ANALYSIS OF RADIOCARBON DATES [J].
Ramsey, Christopher Bronk .
RADIOCARBON, 2009, 51 (01) :337-360
[50]   INTCAL09 AND MARINE09 RADIOCARBON AGE CALIBRATION CURVES, 0-50,000 YEARS CAL BP [J].
Reimer, P. J. ;
Baillie, M. G. L. ;
Bard, E. ;
Bayliss, A. ;
Beck, J. W. ;
Blackwell, P. G. ;
Ramsey, C. Bronk ;
Buck, C. E. ;
Burr, G. S. ;
Edwards, R. L. ;
Friedrich, M. ;
Grootes, P. M. ;
Guilderson, T. P. ;
Hajdas, I. ;
Heaton, T. J. ;
Hogg, A. G. ;
Hughen, K. A. ;
Kaiser, K. F. ;
Kromer, B. ;
McCormac, F. G. ;
Manning, S. W. ;
Reimer, R. W. ;
Richards, D. A. ;
Southon, J. R. ;
Talamo, S. ;
Turney, C. S. M. ;
van der Plicht, J. ;
Weyhenmeye, C. E. .
RADIOCARBON, 2009, 51 (04) :1111-1150