Association of Trypanolytic ApoL1 Variants with Kidney Disease in African Americans

被引:1501
作者
Genovese, Giulio [1 ,2 ,3 ]
Friedman, David J. [1 ,2 ,4 ]
Ross, Michael D. [5 ]
Lecordier, Laurence [6 ]
Uzureau, Pierrick [6 ]
Freedman, Barry I. [7 ]
Bowden, Donald W. [8 ,9 ,10 ]
Langefeld, Carl D. [10 ,11 ,12 ]
Oleksyk, Taras K. [13 ]
Knob, Andrea L. Uscinski [5 ]
Bernhardy, Andrea J. [1 ,2 ]
Hicks, Pamela J. [8 ,9 ,10 ]
Nelson, George W. [14 ]
Vanhollebeke, Benoit [6 ]
Winkler, Cheryl A. [15 ]
Kopp, Jeffrey B. [14 ]
Pays, Etienne [6 ]
Pollak, Martin R. [1 ,2 ,16 ]
机构
[1] Beth Israel Deaconess Med Ctr, Dept Med, Div Nephrol, Boston, MA 02215 USA
[2] Harvard Univ, Sch Med, Boston, MA 02215 USA
[3] Dartmouth Coll, Dept Math, Hanover, NH 03755 USA
[4] Beth Israel Deaconess Med Ctr, Dept Med, Vasc Biol Res Ctr, Boston, MA 02215 USA
[5] Brigham & Womens Hosp, Dept Med, Div Renal, Boston, MA 02215 USA
[6] Univ Libre Bruxelles, Inst Biol & Med Mol, Mol Parasitol Lab, B-6041 Gosselies, Belgium
[7] Wake Forest Univ, Sch Med, Nephrol Sect, Dept Internal Med, Winston Salem, NC 27157 USA
[8] Wake Forest Univ, Sch Med, Dept Biochem, Winston Salem, NC 27157 USA
[9] Wake Forest Univ, Sch Med, Ctr Diabet Res, Winston Salem, NC 27157 USA
[10] Wake Forest Univ, Sch Med, Ctr Human Genom, Winston Salem, NC 27157 USA
[11] Wake Forest Univ, Sch Med, Ctr Publ Hlth Genom, Dept Biostat Sci, Winston Salem, NC 27157 USA
[12] Wake Forest Univ, Sch Med, Div Publ Hlth Sci, Winston Salem, NC 27157 USA
[13] Univ Puerto Rico, Dept Biol, Mayaguez, PR 00681 USA
[14] NIDDKD, Kidney Dis Sect, NIH, Bethesda, MD 20892 USA
[15] NCI, Lab Genom Divers, SAIC Frederick Inc, Frederick, MD 21702 USA
[16] Broad Inst Harvard & MIT, Cambridge, MA 02142 USA
关键词
STAGE RENAL-DISEASE; 9 GENE MYH9; POSITIVE SELECTION; NATURAL-SELECTION; HUMAN SERUM; POLYMORPHISMS; RHODESIENSE; GENOME;
D O I
10.1126/science.1193032
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
African Americans have higher rates of kidney disease than European Americans. Here, we show that, in African Americans, focal segmental glomerulosclerosis (FSGS) and hypertension-attributed end-stage kidney disease (H-ESKD) are associated with two independent sequence variants in the APOL1 gene on chromosome 22 {FSGS odds ratio = 10.5 [95% confidence interval (CI) 6.0 to 18.4]; H-ESKD odds ratio = 7.3 (95% CI 5.6 to 9.5)}. The two APOL1 variants are common in African chromosomes but absent from European chromosomes, and both reside within haplotypes that harbor signatures of positive selection. ApoL1 (apolipoprotein L-1) is a serum factor that lyses trypanosomes. In vitro assays revealed that only the kidney disease-associated ApoL1 variants lysed Trypanosoma brucei rhodesiense. We speculate that evolution of a critical survival factor in Africa may have contributed to the high rates of renal disease in African Americans.
引用
收藏
页码:841 / 845
页数:5
相关论文
共 23 条
  • [1] Natural selection has driven population differentiation in modern humans
    Barreiro, Luis B.
    Laval, Guillaume
    Quach, Helene
    Patin, Etienne
    Quintana-Murci, Lluis
    [J]. NATURE GENETICS, 2008, 40 (03) : 340 - 345
  • [2] RACE, SOCIOECONOMIC-STATUS, AND THE DEVELOPMENT OF END-STAGE RENAL-DISEASE
    BYRNE, C
    NEDELMAN, J
    LUKE, RG
    [J]. AMERICAN JOURNAL OF KIDNEY DISEASES, 1994, 23 (01) : 16 - 22
  • [3] A second generation human haplotype map of over 3.1 million SNPs
    Frazer, Kelly A.
    Ballinger, Dennis G.
    Cox, David R.
    Hinds, David A.
    Stuve, Laura L.
    Gibbs, Richard A.
    Belmont, John W.
    Boudreau, Andrew
    Hardenbol, Paul
    Leal, Suzanne M.
    Pasternak, Shiran
    Wheeler, David A.
    Willis, Thomas D.
    Yu, Fuli
    Yang, Huanming
    Zeng, Changqing
    Gao, Yang
    Hu, Haoran
    Hu, Weitao
    Li, Chaohua
    Lin, Wei
    Liu, Siqi
    Pan, Hao
    Tang, Xiaoli
    Wang, Jian
    Wang, Wei
    Yu, Jun
    Zhang, Bo
    Zhang, Qingrun
    Zhao, Hongbin
    Zhao, Hui
    Zhou, Jun
    Gabriel, Stacey B.
    Barry, Rachel
    Blumenstiel, Brendan
    Camargo, Amy
    Defelice, Matthew
    Faggart, Maura
    Goyette, Mary
    Gupta, Supriya
    Moore, Jamie
    Nguyen, Huy
    Onofrio, Robert C.
    Parkin, Melissa
    Roy, Jessica
    Stahl, Erich
    Winchester, Ellen
    Ziaugra, Liuda
    Altshuler, David
    Shen, Yan
    [J]. NATURE, 2007, 449 (7164) : 851 - U3
  • [4] Non-muscle myosin heavy chain 9 gene MYH9 associations in African Americans with clinically diagnosed type 2 diabetes mellitus-associated ESRD
    Freedman, Barry I.
    Hicks, Pamela J.
    Bostrom, Meredith A.
    Comeau, Mary E.
    Divers, Jasmin
    Bleyer, Anthony J.
    Kopp, Jeffrey B.
    Winkler, Cheryl A.
    Nelson, George W.
    Langefeld, Carl D.
    Bowden, Donald W.
    [J]. NEPHROLOGY DIALYSIS TRANSPLANTATION, 2009, 24 (11) : 3366 - 3371
  • [5] Polymorphisms in the non-muscle myosin heavy chain 9 gene (MYH9) are strongly associated with end-stage renal disease historically attributed to hypertension in African Americans
    Freedman, Barry I.
    Hicks, Pamela J.
    Bostrom, Meredith A.
    Cunningham, Mary E.
    Liu, Yongmei
    Divers, Jasmin
    Kopp, Jeffrey B.
    Winkler, Cheryl A.
    Nelson, George W.
    Langefeld, Carl D.
    Bowden, Donald W.
    [J]. KIDNEY INTERNATIONAL, 2009, 75 (07) : 736 - 745
  • [6] Will the real Trypanosoma brucei rhodesiense please step forward?
    Gibson, W
    [J]. TRENDS IN PARASITOLOGY, 2002, 18 (11) : 486 - 490
  • [7] GIBSON W C, 1986, Parasitology Today, V2, P255, DOI 10.1016/0169-4758(86)90011-6
  • [8] A Composite of Multiple Signals Distinguishes Causal Variants in Regions of Positive Selection
    Grossman, Sharon R.
    Shylakhter, Ilya
    Karlsson, Elinor K.
    Byrne, Elizabeth H.
    Morales, Shannon
    Frieden, Gabriel
    Hostetter, Elizabeth
    Angelino, Elaine
    Garber, Manuel
    Zuk, Or
    Lander, Eric S.
    Schaffner, Stephen F.
    Sabeti, Pardis C.
    [J]. SCIENCE, 2010, 327 (5967) : 883 - 886
  • [9] MYH9 is associated with nondiabetic end-stage renal disease in African Americans
    Kao, W. H. Linda
    Klag, Michael J.
    Meoni, Lucy A.
    Reich, David
    Berthier-Schaad, Yvette
    Li, Man
    Coresh, Josef
    Patterson, Nick
    Tandon, Arti
    Powe, Neil R.
    Fink, Nancy E.
    Sadler, John H.
    Weir, Matthew R.
    Abboud, Hanna E.
    Adler, Sharon G.
    Divers, Jasmin
    Iyengar, Sudha K.
    Freedman, Barry I.
    Kimmel, Paul L.
    Knowler, William C.
    Kohn, Orly F.
    Kramp, Kristopher
    Leehey, David J.
    Nicholas, Susanne B.
    Pahl, Madeleine V.
    Schelling, Jeffrey R.
    Sedor, John R.
    Thornley-Brown, Denyse
    Winkler, Cheryl A.
    Smith, Michael W.
    Parekh, Rulan S.
    [J]. NATURE GENETICS, 2008, 40 (10) : 1185 - 1192
  • [10] A Practical Genome Scan for Population-Specific Strong Selective Sweeps That Have Reached Fixation
    Kimura, Ryosuke
    Fujimoto, Akihiro
    Tokunaga, Katsushi
    Ohashi, Jun
    [J]. PLOS ONE, 2007, 2 (03):