Loop-closure principles in protein folding

被引：20

作者：

Weikl, Thomas R. ^{[1
]}

机构：

[1] Max Planck Inst Colloids & Interfaces, Dept Theory & Biosyst, D-14424 Potsdam, Germany

来源：

ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS | 2008年 / 469卷 / 01期

关键词：

protein folding kinetics; native-state topology; two-state proteins; folding rates; contact order; topological measures; folding routes; loop-closure entropy; effective contact order;

D O I：

10.1016/j.abb.2007.06.018

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Simple theoretical concepts and models have been helpful to understand the folding rates and routes of single-domain proteins. As reviewed in this article, a physical principle that appears to underly these models is loop closure. (C) 2007 Elsevier Inc. All rights reserved.

引用

页码：67 / 75

页数：9

共 148 条

[1] Contour length and refolding rate of a small protein controlled by engineered disulfide bonds
Ainavarapu, Rama Koti
Brujic, Jasna
Huang, Hector H.
Wiita, Arun P.
Lu, Hui
Li, Lewyn
Walther, Kirstin A.
Carrion-Vazquez, Mariano
Li, Hongbin
Fernandez, Julio M.
[J]. BIOPHYSICAL JOURNAL, 2007, 92 (01) : 225 - 233
[2] Simple physical models connect theory and experiment in protein folding kinetics
Alm, E
Morozov, AV
Kortemme, T
Baker, D
[J]. JOURNAL OF MOLECULAR BIOLOGY, 2002, 322 (02) : 463 - 476
[3] Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures
Alm, E
Baker, D
[J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (20) : 11305 - 11310
[4] Fine structure analysis of a protein folding transition state; distinguishing between hydrophobic stabilization and specific packing
Anil, B
Sato, S
Cho, JH
Raleigh, DP
[J]. JOURNAL OF MOLECULAR BIOLOGY, 2005, 354 (03) : 693 - 705
[5] Protein folding pathways studied by pulsed-and native-state hydrogen exchange
Bai, Yawen
[J]. CHEMICAL REVIEWS, 2006, 106 (05) : 1757 - 1768
[6] PROTEIN-FOLDING INTERMEDIATES - NATIVE-STATE HYDROGEN-EXCHANGE
BAI, YW
SOSNICK, TR
MAYNE, L
ENGLANDER, SW
[J]. SCIENCE, 1995, 269 (5221) : 192 - 197
[7] A surprising simplicity to protein folding
Baker, D
[J]. NATURE, 2000, 405 (6782) : 39 - 42
[8] Toward high-resolution de novo structure prediction for small proteins
Bradley, P
Misura, KMS
Baker, D
[J]. SCIENCE, 2005, 309 (5742) : 1868 - 1871
[9] Intermediates and the folding of proteins L and G
Brown, S
Head-Gordon, T
[J]. PROTEIN SCIENCE, 2004, 13 (04) : 958 - 970
[10] Exact solution of the Munoz-Eaton model for protein folding
Bruscolini, P
Pelizzola, A
[J]. PHYSICAL REVIEW LETTERS, 2002, 88 (25) : 4

← 1 2 3 4 5 6 7 8 9 10 →