The Dispanins: A Novel Gene Family of Ancient Origin That Contains 14 Human Members

被引:74
作者
Almen, Markus Sallman [1 ]
Bringeland, Nathalie [1 ]
Fredriksson, Robert [1 ]
Schioth, Helgi B. [1 ]
机构
[1] Uppsala Univ, Dept Neurosci, BMC, Uppsala, Sweden
来源
PLOS ONE | 2012年 / 7卷 / 02期
基金
瑞典研究理事会;
关键词
PROTEIN-COUPLED RECEPTORS; WEST NILE VIRUS; SEQUENCE; IDENTIFICATION; PREDICTION; MARKER;
D O I
10.1371/journal.pone.0031961
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The Interferon induced transmembrane proteins (IFITM) are a family of transmembrane proteins that is known to inhibit cell invasion of viruses such as HIV-1 and influenza. We show that the IFITM genes are a subfamily in a larger family of transmembrane (TM) proteins that we call Dispanins, which refers to a common 2TM structure. We mined the Dispanins in 36 eukaryotic species, covering all major eukaryotic groups, and investigated their evolutionary history using Bayesian and maximum likelihood approaches to infer a phylogenetic tree. We identified ten human genes that together with the known IFITM genes form the Dispanin family. We show that the Dispanins first emerged in eukaryotes in a common ancestor of choanoflagellates and metazoa, and that the family later expanded in vertebrates where it forms four subfamilies (A-D). Interestingly, we also find that the family is found in several different phyla of bacteria and propose that it was horizontally transferred to eukaryotes from bacteria in the common ancestor of choanoflagellates and metazoa. The bacterial and eukaryotic sequences have a considerably conserved protein structure. In conclusion, we introduce a novel family, the Dispanins, together with a nomenclature based on the evolutionary origin.
引用
收藏
页数:8
相关论文
共 33 条
[1]   Mapping the human membrane proteome: a majority of the human membrane proteins can be classified according to function and evolutionary origin [J].
Almen, Markus Sallman ;
Nordstrom, Karl J. V. ;
Fredriksson, Robert ;
Schioth, Helgi B. .
BMC BIOLOGY, 2009, 7 :50
[2]   Identification of the IFITM family as a new molecular marker in human colorectal tumors [J].
Andreu, P ;
Colnot, S ;
Godard, C ;
Laurent-Puig, P ;
Lamarque, D ;
Kahn, A ;
Perret, C ;
Romagnolo, B .
CANCER RESEARCH, 2006, 66 (04) :1949-1955
[3]   Sequence and structure-based prediction of eukaryotic protein phosphorylation sites [J].
Blom, N ;
Gammeltoft, S ;
Brunak, S .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 294 (05) :1351-1362
[4]   The IFITM Proteins Mediate Cellular Resistance to Influenza A H1N1 Virus, West Nile Virus, and Dengue Virus [J].
Brass, Abraham L. ;
Huang, I-Chueh ;
Benita, Yair ;
John, Sinu P. ;
Krishnan, Manoj N. ;
Feeley, Eric M. ;
Ryan, Bethany J. ;
Weyer, Jessica L. ;
van der Weyden, Louise ;
Fikrig, Erol ;
Adams, David J. ;
Xavier, Ramnik J. ;
Farzan, Michael ;
Elledge, Stephen J. .
CELL, 2009, 139 (07) :1243-1254
[5]   Capucin:: A novel striatal marker down-regulated in rodent models of Huntington disease [J].
de Chaldée, M ;
Brochier, C ;
Van de Vel, A ;
Caudy, N ;
Luthi-Carter, R ;
Gaillard, MC ;
Elalouf, JM .
GENOMICS, 2006, 87 (02) :200-207
[6]  
Eddy Sean R, 2009, Genome Inform, V23, P205
[7]   The Pfam protein families database [J].
Finn, Robert D. ;
Mistry, Jaina ;
Tate, John ;
Coggill, Penny ;
Heger, Andreas ;
Pollington, Joanne E. ;
Gavin, O. Luke ;
Gunasekaran, Prasad ;
Ceric, Goran ;
Forslund, Kristoffer ;
Holm, Liisa ;
Sonnhammer, Erik L. L. ;
Eddy, Sean R. ;
Bateman, Alex .
NUCLEIC ACIDS RESEARCH, 2010, 38 :D211-D222
[8]   The G-protein-coupled receptors in the human genome form five main families.: Phylogenetic analysis, paralogon groups, and fingerprints [J].
Fredriksson, R ;
Lagerström, MC ;
Lundin, LG ;
Schiöth, HB .
MOLECULAR PHARMACOLOGY, 2003, 63 (06) :1256-1272
[9]   The solute carrier (SLC) complement of the human genome: Phylogenetic classification reveals four major families [J].
Fredriksson, Robert ;
Nordstroem, Karl J. V. ;
Stephansson, Olga ;
Haegglund, Maria G. A. ;
Schioeth, Helgi B. .
FEBS LETTERS, 2008, 582 (27) :3811-3816
[10]   TRANSCRIPTIONAL AND POSTTRANSCRIPTIONAL REGULATION OF INTERFERON-INDUCED GENE-EXPRESSION IN HUMAN-CELLS [J].
FRIEDMAN, RL ;
MANLY, SP ;
MCMAHON, M ;
KERR, IM ;
STARK, GR .
CELL, 1984, 38 (03) :745-755