Implementation of an Algorithm Based on the Runge-Kutta-Fehlberg Technique and the Potential Energy as a Reaction Coordinate to Locate Intrinsic Reaction Paths

被引:15
作者
Aguilar-Mogas, Antoni [2 ,3 ]
Gimenez, Xavier [2 ,3 ]
Bofill, Josep Maria [1 ,2 ]
机构
[1] Univ Barcelona, Dept Quim Organ, E-08028 Barcelona, Spain
[2] Univ Barcelona, Inst Quim Teor & Computac IQTCUB, E-08028 Barcelona, Spain
[3] Univ Barcelona, Dept Quim Fis, E-08028 Barcelona, Spain
关键词
reaction path; intrinsic reaction coordinate; minimum energy path; Hamilton-Jacobi equation; minimization of Weierstrass E-function; Runge-Kutta-Fehlberg algorithm; NUDGED-ELASTIC-BAND; SURFACE; DYNAMICS; POINTS;
D O I
10.1002/jcc.21539
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The intrinsic reaction coordinate (IRC) curve is used widely as a representation of the Reaction Path and can be parameterized taking the potential energy as a reaction coordinate (Aguilar-Mogas et al., J Chem Phys 2008, 128, 104102). Taking this parameterization and its variational nature, an algorithm is proposed that permits to locate this type of curve joining two points from an arbitrary curve that joints the same initial and final points. The initial and final points are minima of the potential energy surface associated with the geometry of reactants and products of the reaction whose mechanism is under study. The arbitrary curves are moved toward the IRC curve by a Runge-Kutta-Fehlberg technique. This technique integrates a set of differential equations resulting from the minimization until value zero of the line integral over the Weierstrass E-function. The Weierstrass E-function is related with the second variation in the theory of calculus of variations. The algorithm has been proved in real chemical systems. (C) 2010 Wiley Periodicals, Inc. J Comput Chem 31: 2510-2525, 2010
引用
收藏
页码:2510 / 2525
页数:16
相关论文
共 49 条
[1]   Applications of analytic and geometry concepts of the theory of calculus of variations to the Intrinsic Reaction Coordinate model [J].
Aguilar-Mogas, A. ;
Crehuet, R. ;
Gimenez, X. ;
Bofill, J. M. .
MOLECULAR PHYSICS, 2007, 105 (19-22) :2475-2492
[2]   On the implementation of the Runge-Kutta-Fehlberg algorithm to integrate intrinsic reaction coordinate paths [J].
Aguilar-Mogas, Antoni ;
Gimenez, Xavier ;
Maria Bofill, Josep .
CHEMICAL PHYSICS LETTERS, 2006, 432 (1-3) :375-382
[3]   Finding reaction paths using the potential energy as reaction coordinate [J].
Aguilar-Mogas, Antoni ;
Gimenez, Xavier ;
Maria Bofill, Josep .
JOURNAL OF CHEMICAL PHYSICS, 2008, 128 (10)
[4]  
Anglada JM, 2001, J COMPUT CHEM, V22, P387, DOI 10.1002/1096-987X(200103)22:4<387::AID-JCC1010>3.0.CO
[5]  
2-R
[6]  
[Anonymous], 1965, The algebraic eigenvalue problem
[7]  
[Anonymous], 1953, Methods of mathematical physics
[8]   ABINITIO REACTION PATHS AND DIRECT DYNAMICS CALCULATIONS [J].
BALDRIDGE, KK ;
GORDON, MS ;
STECKLER, R ;
TRUHLAR, DG .
JOURNAL OF PHYSICAL CHEMISTRY, 1989, 93 (13) :5107-5119
[9]   THE LOCAL DEFINITION OF THE OPTIMUM ASCENT PATH ON A MULTIDIMENSIONAL POTENTIAL-ENERGY SURFACE AND ITS PRACTICAL APPLICATION FOR THE LOCATION OF SADDLE POINTS [J].
BASILEVSKY, MV ;
SHAMOV, AG .
CHEMICAL PHYSICS, 1981, 60 (03) :347-358
[10]   IMPROVED TETRAHEDRON METHOD FOR BRILLOUIN-ZONE INTEGRATIONS [J].
BLOCHL, PE ;
JEPSEN, O ;
ANDERSEN, OK .
PHYSICAL REVIEW B, 1994, 49 (23) :16223-16233