Expression profiling using cDNA microarrays

被引:1190
作者
Duggan, DJ [1 ]
Bittner, M [1 ]
Chen, YD [1 ]
Meltzer, P [1 ]
Trent, JM [1 ]
机构
[1] NHGRI, Canc Genet Branch, NIH, Bethesda, MD 20892 USA
关键词
D O I
10.1038/4434
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
cDNA microarrays are capable of profiling gene expression patterns of tens of thousands of genes in a single experiment. DNA targets, in the form of 3' expressed sequence tags (ESTs), are arrayed onto glass slides (or membranes) and probed with fluorescent- or radioactively-labelled cDNAs. Here,we review technical aspects of cDNA microarrays, including the general principles, fabrication of the arrays, target labelling, image analysis and data extraction, management and mining.
引用
收藏
页码:10 / 14
页数:5
相关论文
共 33 条
  • [1] COMPLEMENTARY-DNA SEQUENCING - EXPRESSED SEQUENCE TAGS AND HUMAN GENOME PROJECT
    ADAMS, MD
    KELLEY, JM
    GOCAYNE, JD
    DUBNICK, M
    POLYMEROPOULOS, MH
    XIAO, H
    MERRIL, CR
    WU, A
    OLDE, B
    MORENO, RF
    KERLAVAGE, AR
    MCCOMBIE, WR
    VENTER, JC
    [J]. SCIENCE, 1991, 252 (5013) : 1651 - 1656
  • [2] METHOD FOR DETECTION OF SPECIFIC RNAS IN AGAROSE GELS BY TRANSFER TO DIAZOBENZYLOXYMETHYL-PAPER AND HYBRIDIZATION WITH DNA PROBES
    ALWINE, JC
    KEMP, DJ
    STARK, GR
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1977, 74 (12) : 5350 - 5354
  • [3] GenBank
    Benson, Dennis A.
    Karsch-Mizrachi, Ilene
    Lipman, David J.
    Ostell, James
    Sayers, Eric W.
    [J]. NUCLEIC ACIDS RESEARCH, 2011, 39 : D32 - D37
  • [4] SIZING AND MAPPING OF EARLY ADENOVIRUS MESSENGER-RNAS BY GEL-ELECTROPHORESIS OF S1 ENDONUCLEASE-DIGESTED HYBRIDS
    BERK, AJ
    SHARP, PA
    [J]. CELL, 1977, 12 (03) : 721 - 732
  • [5] DBEST - DATABASE FOR EXPRESSED SEQUENCE TAGS
    BOGUSKI, MS
    LOWE, TMJ
    TOLSTOSHEV, CM
    [J]. NATURE GENETICS, 1993, 4 (04) : 332 - 333
  • [6] Options available - from start to finish - for obtaining expression data by microarray
    Bowtell, DDL
    [J]. NATURE GENETICS, 1999, 21 (Suppl 1) : 25 - 32
  • [7] Profiling expression patterns and isolating differentially expressed genes by cDNA microarray system with colorimetry detection
    Chen, JJW
    Wu, R
    Yang, PC
    Huang, JY
    Sher, YP
    Han, MH
    Kao, WC
    Lee, PJ
    Chiu, TF
    Chang, F
    Chu, YW
    Wu, CW
    Peck, K
    [J]. GENOMICS, 1998, 51 (03) : 313 - 324
  • [8] Chen Y, 1997, J Biomed Opt, V2, P364, DOI 10.1117/12.281504
  • [9] Making and reading microarrays
    Cheung, VG
    Morley, M
    Aguilar, F
    Massimi, A
    Kucherlapati, R
    Childs, G
    [J]. NATURE GENETICS, 1999, 21 (Suppl 1) : 15 - 19
  • [10] Bacterial transcript imaging by hybridization of total RNA to oligonucleotide arrays
    de Saizieu, A
    Certa, U
    Warrington, J
    Gray, C
    Keck, W
    Mous, J
    [J]. NATURE BIOTECHNOLOGY, 1998, 16 (01) : 45 - 48