2x genomes - Does depth matter?

被引：42

作者：

Green, Phil ^{[1
]}

机构：

[1] Univ Washington, Dept Genome Sci, Seattle, WA 98195 USA

[2] Univ Washington, Howard Hughes Med Inst, Seattle, WA 98195 USA

来源：

GENOME RESEARCH | 2007年 / 17卷 / 11期

关键词：

FUNCTIONAL ELEMENTS; NONCODING SEQUENCES; SHOTGUN; IDENTIFICATION; SELECTION;

D O I：

10.1101/gr.7050807

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

页码：1547 / 1549

页数：3

共 21 条

[1] The genome sequence of Drosophila melanogaster [J].

Adams, MD ;

Celniker, SE ;

Holt, RA ;

Evans, CA ;

Gocayne, JD ;

Amanatides, PG ;

Scherer, SE ;

Li, PW ;

Hoskins, RA ;

Galle, RF ;

George, RA ;

Lewis, SE ;

Richards, S ;

Ashburner, M ;

Henderson, SN ;

Sutton, GG ;

Wortman, JR ;

Yandell, MD ;

Zhang, Q ;

Chen, LX ;

Brandon, RC ;

Rogers, YHC ;

Blazej, RG ;

Champe, M ;

Pfeiffer, BD ;

Wan, KH ;

Doyle, C ;

Baxter, EG ;

Helt, G ;

Nelson, CR ;

Miklos, GLG ;

Abril, JF ;

Agbayani, A ;

An, HJ ;

Andrews-Pfannkoch, C ;

Baldwin, D ;

Ballew, RM ;

Basu, A ;

Baxendale, J ;

Bayraktaroglu, L ;

Beasley, EM ;

Beeson, KY ;

Benos, PV ;

Berman, BP ;

Bhandari, D ;

Bolshakov, S ;

Borkova, D ;

Botchan, MR ;

Bouck, J ;

Brokstein, P .

SCIENCE, 2000, 287 (5461) :2185-2195

[2] Whole-genome re-sequencing [J].

Bentley, David R. .

CURRENT OPINION IN GENETICS & DEVELOPMENT, 2006, 16 (06) :545-552

[3] Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project [J].

Birney, Ewan ;

Stamatoyannopoulos, John A. ;

Dutta, Anindya ;

Guigo, Roderic ;

Gingeras, Thomas R. ;

Margulies, Elliott H. ;

Weng, Zhiping ;

Snyder, Michael ;

Dermitzakis, Emmanouil T. ;

Stamatoyannopoulos, John A. ;

Thurman, Robert E. ;

Kuehn, Michael S. ;

Taylor, Christopher M. ;

Neph, Shane ;

Koch, Christoph M. ;

Asthana, Saurabh ;

Malhotra, Ankit ;

Adzhubei, Ivan ;

Greenbaum, Jason A. ;

Andrews, Robert M. ;

Flicek, Paul ;

Boyle, Patrick J. ;

Cao, Hua ;

Carter, Nigel P. ;

Clelland, Gayle K. ;

Davis, Sean ;

Day, Nathan ;

Dhami, Pawandeep ;

Dillon, Shane C. ;

Dorschner, Michael O. ;

Fiegler, Heike ;

Giresi, Paul G. ;

Goldy, Jeff ;

Hawrylycz, Michael ;

Haydock, Andrew ;

Humbert, Richard ;

James, Keith D. ;

Johnson, Brett E. ;

Johnson, Ericka M. ;

Frum, Tristan T. ;

Rosenzweig, Elizabeth R. ;

Karnani, Neerja ;

Lee, Kirsten ;

Lefebvre, Gregory C. ;

Navas, Patrick A. ;

Neri, Fidencio ;

Parker, Stephen C. J. ;

Sabo, Peter J. ;

Sandstrom, Richard ;

Shafer, Anthony .

NATURE, 2007, 447 (7146) :799-816

[4] A model of the statistical power of comparative genome sequence analysis [J].

Eddy, SR .

PLOS BIOLOGY, 2005, 3 (01) :95-102

[5] A Sanger/pyrosequencing hybrid approach tor the generation of high-quality draft assemblies of marine microbial genomes [J].

Goldberg, Susanne M. D. ;

Johnson, Justin ;

Busam, Dana ;

Feldblyum, Tamara ;

Ferriera, Steve ;

Friedman, Robert ;

Halpern, Aaron ;

Khouri, Hoda ;

Kravitz, Saul A. ;

Lauro, Federico M. ;

Li, Kelvin ;

Rogers, Yu-Hui ;

Strausberg, Robert ;

Sutton, Granger ;

Tallon, Luke ;

Thomas, Torsten ;

Venter, Eli ;

Frazier, Marvin ;

Venter, J. Craig .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (30) :11240-11245

[6] Against a whole-genome shotgun [J].

Green, P .

GENOME RESEARCH, 1997, 7 (05) :410-417

[7] A large family of ancient repeat elements in the human genome is under strong selection [J].

Kamal, M ;

Xie, XH ;

Lander, ES .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (08) :2740-2745

[8] The dog genome: Survey sequencing and comparative analysis [J].

Kirkness, EF ;

Bafna, V ;

Halpern, AL ;

Levy, S ;

Remington, K ;

Rusch, DB ;

Delcher, AL ;

Pop, M ;

Wang, W ;

Fraser, CM ;

Venter, JC .

SCIENCE, 2003, 301 (5641) :1898-1903

[9]

LANDER E S, 1988, Genomics, V2, P231

[10] Thousands of human mobile element fragments undergo strong purifying selection near developmental genes [J].

Lowe, Craig B. ;

Bejerano, Gill ;

Haussler, David .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2007, 104 (19) :8005-8010

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