The role of cotranslation in protein folding: a lattice model study

Computational studies of protein folding have implicitly assumed that folding occurs from a denatured state comprised of the entire protein. Cotranslational folding accounts for the linear production and release of a protein from the ribosome, allowing part of the protein to explore its conformation space before other parts have been synthesized. This gradual 'extrusion' from the ribosome can yield different folding kinetics than direct folding from the denatured state, for a lattice folding model. First, in model proteins containing chiefly short-ranged (local in sequence) contacts, cotranslational folding is shown to be significantly faster than direct folding from the denatured state. Secondly, for model proteins with two competing native states, cotranslational folding tilts the apparent equilibrium toward the state with a more local-contact dominant topology. (C) 2003 Elsevier Ltd. All rights reserved.