Measurement of small scalar and dipolar couplings in purine and pyrimidine bases

被引:32
作者
Zidek, L
Wu, HH
Feigon, J
Sklenár, V
机构
[1] Masaryk Univ, Fac Sci, Natl Ctr Biomol Res, CS-61137 Brno, Czech Republic
[2] Univ Calif Los Angeles, Dept Chem & Biochem, Los Angeles, CA 90024 USA
[3] Univ Calif Los Angeles, Inst Mol Biol, Los Angeles, CA 90024 USA
关键词
NMR methods; nucleic acid bases; residual dipolar couplings; spin-state-selective filters;
D O I
10.1023/A:1012435106858
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A suite of spin-state-selective excitation ((SE)-E-3) NMR experiments for the measurements of small one-bond (C-13-C-13, N-15-C-13) and two-bond (H-1-C-13, H-1-N-15) coupling constants in (1)3C,(1)5N labeled purine and pyrimidine bases is presented. The incorporation of band-selective shaped pulses, elimination of the cross talk between alpha and beta sub-spectra, and accuracy and precision of the proposed approach are discussed. Merits of using (SE)-E-3 rather than alpha/beta -half-filter are demonstrated using results obtained on isotopically labeled DNA oligonucleotides.
引用
收藏
页码:153 / 160
页数:8
相关论文
共 32 条
[1]   Spin-state selection filters for the measurement of heteronuclear one-bond coupling constants [J].
Andersson, P ;
Weigelt, J ;
Otting, G .
JOURNAL OF BIOMOLECULAR NMR, 1998, 12 (03) :435-441
[2]   Measurement of residual dipolar couplings of macromolecules aligned in the nematic phase of a colloidal suspension of rod-shaped viruses [J].
Clore, GM ;
Starich, MR ;
Gronenborn, AM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (40) :10571-10572
[3]   Impact of residual dipolar couplings on the accuracy of NMR structures determined from a minimal number of NOE restraints [J].
Clore, GM ;
Starich, MR ;
Bewley, CA ;
Cai, ML ;
Kuszewski, J .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (27) :6513-6514
[4]   Internucleotide scalar couplings across hydrogen bonds in Watson-Crickand Hoogsteen base pairs of a DNA triplex [J].
Dingley, AJ ;
Masse, JE ;
Peterson, RD ;
Barfield, M ;
Feigon, J ;
Grzesiek, S .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1999, 121 (25) :6019-6027
[5]   GAUSSIAN PULSE CASCADES - NEW ANALYTICAL FUNCTIONS FOR RECTANGULAR SELECTIVE INVERSION AND IN-PHASE EXCITATION IN NMR [J].
EMSLEY, L ;
BODENHAUSEN, G .
CHEMICAL PHYSICS LETTERS, 1990, 165 (06) :469-476
[6]   BAND-SELECTIVE RADIOFREQUENCY PULSES [J].
GEEN, H ;
FREEMAN, R .
JOURNAL OF MAGNETIC RESONANCE, 1991, 93 (01) :93-141
[7]   THE IMPORTANCE OF NOT SATURATING H2O IN PROTEIN NMR - APPLICATION TO SENSITIVITY ENHANCEMENT AND NOE MEASUREMENTS [J].
GRZESIEK, S ;
BAX, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1993, 115 (26) :12593-12594
[8]   Tunable alignment of macromolecules by filamentous phage yields dipolar coupling interactions [J].
Hansen, MR ;
Mueller, L ;
Pardi, A .
NATURE STRUCTURAL BIOLOGY, 1998, 5 (12) :1065-1074
[9]  
Ippel JH, 1996, MAGN RESON CHEM, V34, pS156, DOI 10.1002/(SICI)1097-458X(199612)34:13<S156::AID-OMR68>3.0.CO
[10]  
2-U