Ab initio structure solution by charge flipping

被引:563
作者
Oszlányi, G [1 ]
Süto, A [1 ]
机构
[1] Hungarian Acad Sci, Res Inst Solid State Phys & Opt, H-1525 Budapest, Hungary
来源
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES | 2004年 / 60卷
关键词
D O I
10.1107/S0108767303027569
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
In this paper, an extremely simple structure solution method termed charge flipping is presented. It works ab initio on high-resolution X-ray diffraction data in the manner of Fourier recycling. The real-space modification simply changes the sign of charge density below a threshold, while in reciprocal space the moduli F-obs are retained resulting in an F-obs map without weighting. The algorithm is tested using synthetic data for a wide range of structures, the solution statistics are analysed and the quality of reconstruction is checked. Finally, mathematical aspects of the algorithm are considered in detail, and these show that in this chaotic iteration process the solution is a limit cycle and not a fixed point.
引用
收藏
页码:134 / 141
页数:8
相关论文
共 24 条
[1]   Bias reduction in phase refinement by modified interference functions: Introducing the gamma correction [J].
Abrahams, JP .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1997, 53 :371-376
[2]   Methods used in the structure determination of bovine mitochondrial F-1 ATPase [J].
Abrahams, JP ;
Leslie, AGW .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 :30-42
[3]   The Cambridge Structural Database: a quarter of a million crystal structures and rising [J].
Allen, FH .
ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 2002, 58 (3 PART 1) :380-388
[4]   Quercetin 2,3-dioxygenase mimicking ring cleavage of the flavonolate ligand assisted by copper.: Synthesis and characterization of copper(I) complexes [Cu(PPh3)2(fla)] (fla = flavonolate) and [Cu(PPh3)2(O-bs)] (O-bs = O-benzoylsalicylate) [J].
Balogh-Hergovich, É ;
Kaizer, J ;
Speier, G ;
Fülöp, V ;
Párkányi, L .
INORGANIC CHEMISTRY, 1999, 38 (17) :3787-3795
[5]   Supramolecular synthesis of organic laminates with affinity for aromatic guests: A new class of clay mimics [J].
Biradha, K ;
Dennis, D ;
MacKinnon, VA ;
Sharma, CVK ;
Zaworotko, MJ .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (46) :11894-11903
[6]   Solving crystal structures in P1:: an automated procedure for finding an allowed origin in the correct space group [J].
Burla, MC ;
Carrozzini, B ;
Cascarano, GL ;
Giacovazzo, C ;
Polidori, G .
JOURNAL OF APPLIED CRYSTALLOGRAPHY, 2000, 33 :307-311
[7]   Solution of the crystallographic phase problem by iterated projections [J].
Elser, V .
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2003, 59 :201-209
[8]   PHASE RETRIEVAL ALGORITHMS - A COMPARISON [J].
FIENUP, JR .
APPLIED OPTICS, 1982, 21 (15) :2758-2769
[9]  
GERCHBERG RW, 1972, OPTIK, V35, P237
[10]  
Irngartinger H, 1999, ANGEW CHEM INT EDIT, V38, P1279, DOI 10.1002/(SICI)1521-3773(19990503)38:9<1279::AID-ANIE1279>3.0.CO