Complete genomic sequence of Pepper vein banding virus (PVBV):: a distinct member of the genus Potyvirus

被引：26

作者：

Anindya, R ^{[1
]}

Joseph, J ^{[1
]}

Gowri, TDS ^{[1
]}

Savithri, HS ^{[1
]}

机构：

[1] Indian Inst Sci, Dept Biochem, Bangalore 560012, Karnataka, India

来源：

ARCHIVES OF VIROLOGY | 2004年 / 149卷 / 03期

关键词：

D O I：

10.1007/s00705-003-0236-0

中图分类号：

Q93 [微生物学];

学科分类号：

071005 ; 100705 ;

摘要：

The complete genomic sequence of Pepper vein banding virus (PVBV), a potyvirus infecting chilli and other solanaceous plants in south India, was determined and compared with those of other potyviruses. The viral genome contained 9711 nucleotides, excluding the poly-A tail. The length of the 5'- and 3'-untranslated regions (UTR) were 163 and 281 nucleotides respectively. As for other potyviruses, the PVBV genome has a single open reading frame (ORF) starting at nucleotide 164 and ending at nt 9430, which encodes a polyprotein of 3088 amino acid residues. There are nine putative conserved cleavage sites within the polyprotein, which can result in ten functionally distinct protein products. Phylogenetic analysis of the potyviral polyprotein sequences showed that PVBV is a distinct species of this genus.

引用

页码：625 / 632

页数：8

共 21 条

[1] MUTATIONAL ANALYSIS OF THE HELPER COMPONENT-PROTEINASE GENE OF A POTYVIRUS - EFFECTS OF AMINO-ACID SUBSTITUTIONS, DELETIONS, AND GENE REPLACEMENT ON VIRULENCE AND APHID TRANSMISSIBILITY [J].

ATREYA, CD ;

PIRONE, TP .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (24) :11919-11923

[2] Molecular taxonomy of a new potyvirus isolated from chilli pepper in Thailand [J].

Chiemsombat, P ;

Sae-Ung, N ;

Attathom, S ;

Patarapuwadol, S ;

Siriwong, P .

ARCHIVES OF VIROLOGY, 1998, 143 (10) :1855-1863

[3] PHYLOGENY OF CAPSID PROTEINS OF ROD-SHAPED AND FILAMENTOUS RNA PLANT-VIRUSES - 2 FAMILIES WITH DISTINCT PATTERNS OF SEQUENCE AND PROBABLY STRUCTURE CONSERVATION [J].

DOLJA, VV ;

BOYKO, VP ;

AGRANOVSKY, AA ;

KOONIN, EV .

VIROLOGY, 1991, 184 (01) :79-86

[4] EXPRESSION OF VIRUS-ENCODED PROTEINASES - FUNCTIONAL AND STRUCTURAL SIMILARITIES WITH CELLULAR ENZYMES [J].

DOUGHERTY, WG ;

SEMLER, BL .

MICROBIOLOGICAL REVIEWS, 1993, 57 (04) :781-822

[5] Complete sequence of the genomic RNA of the prevalent strain of a potyvirus infecting maize in China [J].

Fan, ZF ;

Chen, HY ;

Liang, XM ;

Li, HF .

ARCHIVES OF VIROLOGY, 2003, 148 (04) :773-782

[6] The RNA helicase CI from plum pox potyvirus has two regions involved in binding to RNA [J].

Fernandez, A ;

Garcia, JA .

FEBS LETTERS, 1996, 388 (2-3) :206-210

[7] IDENTIFICATION OF THE MOTIFS WITHIN THE TOBACCO MOSAIC-VIRUS 5'-LEADER RESPONSIBLE FOR ENHANCING TRANSLATION [J].

GALLIE, DR ;

WALBOT, V .

NUCLEIC ACIDS RESEARCH, 1992, 20 (17) :4631-4638

[8] Determination of 3′-terminal nucleotide sequence of pepper vein banding virus RNA and expression of its coat protein in Escherichia coli [J].

Joseph, J ;

Savithri, HS .

ARCHIVES OF VIROLOGY, 1999, 144 (09) :1679-1687

[9] Mutational analysis of the NIa protease from pepper vein banding potyvirus [J].

Joseph, J ;

Savithri, HS .

ARCHIVES OF VIROLOGY, 2000, 145 (12) :2493-2502

[10] POSSIBLE ROLE OF FLANKING NUCLEOTIDES IN RECOGNITION OF THE AUG INITIATOR CODON BY EUKARYOTIC RIBOSOMES [J].

KOZAK, M .

NUCLEIC ACIDS RESEARCH, 1981, 9 (20) :5233-5252

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