Tree of life for the genera of Chinese vascular plants

被引：102

作者：

Chen, Zhi-Duan ^{[1
]}

Yang, Tuo ^{[1
,13
]}

Lin, Li ^{[1
,13
]}

Lu, Li-Min ^{[1
]}

Li, Hong-Lei ^{[1
,2
,3
]}

Sun, Miao ^{[1
]}

Liu, Bing ^{[1
]}

Chen, Min ^{[1
,13
]}

Niu, Yan-Ting ^{[1
,13
]}

Ye, Jian-Fei ^{[1
,13
]}

Cao, Zhi-Yong ^{[1
]}

Liu, Hong-Mei ^{[2
,3
]}

Wang, Xiao-Ming ^{[2
,3
]}

Wang, Wei ^{[1
]}

Zhang, Jing-Bo ^{[1
,13
]}

Meng, Zhen ^{[4
]}

Cao, Wei ^{[4
]}

Li, Jian-Hui ^{[4
]}

Wu, Sheng-Dan ^{[5
]}

Zhao, Hui-Ling ^{[5
]}

Liu, Zhong-Jian ^{[6
]}

Du, Zhi-Yuan ^{[7
]}

Wang, Qing-Feng ^{[7
]}

Guo, Jing ^{[5
]}

Tan, Xin-Xin ^{[5
]}

Su, Jun-Xia ^{[5
]}

Zhang, Lin-Jing ^{[5
]}

Yang, Lei-Lei ^{[2
,3
]}

Liao, Yi-Ying ^{[2
,3
]}

Li, Ming-He ^{[6
]}

Zhang, Guo-Qiang ^{[6
]}

Chung, Shih-Wen ^{[8
]}

Zhang, Jian ^{[1
]}

Xiang, Kun-Li ^{[1
,13
]}

Li, Rui-Qi ^{[1
]}

Soltis, Douglas E. ^{[9
,10
,11
]}

Soltis, Pamela S. ^{[10
,11
]}

Zhou, Shi-Liang ^{[1
]}

Ran, Jin-Hua ^{[1
]}

Wang, Xiao-Quan ^{[1
]}

Jin, Xiao-Hua ^{[1
]}

Chen, You-Sheng ^{[1
]}

Gao, Tian-Gang ^{[1
]}

Li, Jian-Hua ^{[12
]}

Zhang, Shou-Zhou ^{[2
,3
]}

Lu, An-Ming ^{[1
]}

机构：

[1] Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China

[2] Fairylake Bot Garden, Shenzhen Key Lab Southern Subtrop Plant Divers, Shenzhen, Peoples R China

[3] Chinese Acad Sci, Shenzhen 518004, Peoples R China

[4] Chinese Acad Sci, Comp Network Informat Ctr, Beijing 100190, Peoples R China

[5] Shanxi Normal Univ, Coll Life Sci, Linfen 041004, Peoples R China

[6] Orchid Conservat & Res Ctr Shenzhen, Shenzhen 518114, Peoples R China

[7] Chinese Acad Sci, Wuhan Bot Garden, Wuhan 430074, Peoples R China

[8] Taiwan Forestry Res Inst, Dept Bot, 20 Nan Hai Rd, Taipei 100, Taiwan

[9] Univ Florida, Dept Biol, Gainesville, FL 32611 USA

[10] Univ Florida, Florida Museum Nat Hist, Gainesville, FL 32611 USA

[11] Univ Florida, Genet Inst, Gainesville, FL 32610 USA

[12] Hope Coll, Dept Biol, Holland, MI 49423 USA

[13] Univ Chinese Acad Sci, Beijing 100049, Peoples R China

来源：

JOURNAL OF SYSTEMATICS AND EVOLUTION | 2016年 / 54卷 / 04期

基金：

美国国家科学基金会; 中国国家自然科学基金;

关键词：

China; DarwinTree; megaphylogeny; regional tree of life; SoTree; vascular plants; SEED PLANTS; EXTANT GYMNOSPERMS; NUCLEOTIDE-SEQUENCES; MOLECULAR PHYLOGENY; DNA-SEQUENCES; NUCLEAR GENES; DATA SETS; CHLOROPLAST; EVOLUTION; MITOCHONDRIAL;

D O I：

10.1111/jse.12219

中图分类号：

Q94 [植物学];

学科分类号：

071001 [植物学];

摘要：

We reconstructed a phylogenetic tree of Chinese vascular plants (Tracheophyta) using sequences of the chloroplast genes atpB, matK, ndhF, and rbcL and mitochondrial matR. We produced a matrix comprising 6098 species and including 13 695 DNA sequences, of which 1803 were newly generated. Our taxonomic sampling spanned 3114 genera representing 323 families of Chinese vascular plants, covering more than 93% of all genera known from China. The comprehensive large phylogeny supports most relationships among and within families recognized by recent molecular phylogenetic studies for lycophytes, ferns (monilophytes), gymnosperms, and angiosperms. For angiosperms, most families in Angiosperm Phylogeny Group IV are supported as monophyletic, except for a paraphyletic Dipterocarpaceae and Santalaceae. The infrafamilial relationships of several large families and monophyly of some large genera are well supported by our dense taxonomic sampling. Our results showed that two species of Eberhardtia are sister to a clade formed by all other taxa of Sapotaceae, except Sarcosperma. We have made our phylogeny of Chinese vascular plants publically available for the creation of subtrees via SoTree (http://www.darwintree.cn/flora/index.shtml), an automated phylogeny assembly tool for ecologists.

引用

页码：277 / 306

页数：30

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