GeneLoc: exon-based integration of human genome maps

被引：25

作者：

Rosen, Naomi ^{[1
]}

Chalifa-Caspi, Vered ^{[1
]}

Shmueli, Orit ^{[1
]}

Adato, Avital ^{[1
]}

Lapidot, Michal ^{[1
]}

Stampnitzky, Julie ^{[1
]}

Safran, Marilyn ^{[1
]}

Lancet, Doron ^{[1
]}

机构：

[1] Weizmann Inst Sci, IL-76100 Rehovot, Israel

来源：

BIOINFORMATICS | 2003年 / 19卷

关键词：

D O I：

10.1093/bioinformatics/btg1030

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Motivation: Despite the numerous available whole-genome mapping resources, no comprehensive, integrated map of the human genome yet exists. Results: GeneLoc, software adjunct to GeneCards and UDB, integrates gene lists by comparing genomic coordinates at the exon level and assigns unique and meaningful identifiers to each gene.

引用

页码：i222 / i224

页数：3

共 14 条

[1] USH3A transcripts encode clarin-1, a four- transmembrane-domain protein with a possible role in sensory synapses [J].

Adato, A ;

Vreugde, S ;

Joensuu, T ;

Avidan, N ;

Hamalainen, R ;

Belenkiy, O ;

Olender, T ;

Bonne-Tamir, B ;

Ben-Asher, E ;

Espinos, C ;

Millán, JM ;

Lehesjoki, AE ;

Flannery, JG ;

Avraham, KB ;

Pietrokovski, S ;

Sankila, EM ;

Beckmann, JS ;

Lancet, D .

EUROPEAN JOURNAL OF HUMAN GENETICS, 2002, 10 (06) :339-350

[2] Prediction of complete gene structures in human genomic DNA [J].

Burge, C ;

Karlin, S .

JOURNAL OF MOLECULAR BIOLOGY, 1997, 268 (01) :78-94

[3] CDNA SEQUENCE AND GENOMIC STRUCTURE OF EV12B, A GENE LYING WITHIN AN INTRON OF THE NEUROFIBROMATOSIS TYPE-1 GENE [J].

CAWTHON, RM ;

ANDERSEN, LB ;

BUCHBERG, AM ;

XU, GF ;

OCONNELL, P ;

VISKOCHIL, D ;

WEISS, RB ;

WALLACE, MR ;

MARCHUK, DA ;

CULVER, M ;

STEVENS, J ;

JENKINS, NA ;

COPELAND, NG ;

COLLINS, FS ;

WHITE, R .

GENOMICS, 1991, 9 (03) :446-460

[4]

CHALIFACASPI V, 1997, GENOME DIGEST, V15

[5] The Ensembl genome database project [J].

Hubbard, T ;

Barker, D ;

Birney, E ;

Cameron, G ;

Chen, Y ;

Clark, L ;

Cox, T ;

Cuff, J ;

Curwen, V ;

Down, T ;

Durbin, R ;

Eyras, E ;

Gilbert, J ;

Hammond, M ;

Huminiecki, L ;

Kasprzyk, A ;

Lehvaslaiho, H ;

Lijnzaad, P ;

Melsopp, C ;

Mongin, E ;

Pettett, R ;

Pocock, M ;

Potter, S ;

Rust, A ;

Schmidt, E ;

Searle, S ;

Slater, G ;

Smith, J ;

Spooner, W ;

Stabenau, A ;

Stalker, J ;

Stupka, E ;

Ureta-Vidal, A ;

Vastrik, I ;

Clamp, M .

NUCLEIC ACIDS RESEARCH, 2002, 30 (01) :38-41

[6]

Jongeneel CV, 2000, BIOINFORMATICS, V16, P1059

[7] The human genome browser at UCSC [J].

Kent, WJ ;

Sugnet, CW ;

Furey, TS ;

Roskin, KM ;

Pringle, TH ;

Zahler, AM ;

Haussler, D .

GENOME RESEARCH, 2002, 12 (06) :996-1006

[8]

Kulp D, 1996, PACIFIC SYMPOSIUM ON BIOCOMPUTING '97, P232

[9] GeneCards: a novel functional genomics compendium with automated data mining and query reformulation support [J].

Rebhan, M ;

Chalifa-Caspi, V ;

Prilusky, J ;

Lancet, D .

BIOINFORMATICS, 1998, 14 (08) :656-664

[10] GeneCards™ 2002:: towards a complete, object-oriented, human gene compendium [J].

Safran, M ;

Solomon, I ;

Shmueli, O ;

Lapidot, M ;

Shen-Orr, S ;

Adato, A ;

Ben-Dor, U ;

Esterman, N ;

Rosen, N ;

Peter, I ;

Olender, T ;

Chalifa-Caspi, V ;

Lancet, D .

BIOINFORMATICS, 2002, 18 (11) :1542-1543

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