Spectroscopically determined molecular mechanics model for the intermolecular interactions in hydrogen-bonded formic acid dimer structures

被引:35
作者
Qian, WL
Krimm, S [1 ]
机构
[1] Univ Michigan, Div Biophys Res, Ann Arbor, MI 48109 USA
[2] Univ Michigan, Dept Phys, Ann Arbor, MI 48109 USA
关键词
D O I
10.1021/jp010042p
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A molecular mechanics (MM) energy function has been optimized for the seven ab initio hydrogen-bonded structures of the formic acid dimer (FAD). Intermolecular interactions are represented by atomic charges, atomic dipoles, and charge fluxes in addition to the van der Waals terms. Intramolecular force constants are optimized by the analytic SDFF procedure. Ab initio MP2/6-311++G** structures, interaction energies, MP2/6-31+G* normal-mode frequencies, and other properties are very well reproduced, indicating that such a nonbonded interaction model can serve as an appropriate representation of the hydrogen-bonding contribution not only for the FAD but in MM functions of other hydrogen-bonded systems.
引用
收藏
页码:5046 / 5053
页数:8
相关论文
共 43 条
[1]   Crystallographic evidence for C-alpha-H center dot center dot center dot O=C hydrogen bonds in a collagen triple helix [J].
Bella, J ;
Berman, HM .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 264 (04) :734-742
[2]   THE RAMAN-SPECTRA OF GASEOUS FORMIC ACID-H2 AND FORMIC ACID-D2 [J].
BERTIE, JE ;
MICHAELIAN, KH .
JOURNAL OF CHEMICAL PHYSICS, 1982, 76 (02) :886-894
[3]   CALCULATION OF SMALL MOLECULAR INTERACTIONS BY DIFFERENCES OF SEPARATE TOTAL ENERGIES - SOME PROCEDURES WITH REDUCED ERRORS [J].
BOYS, SF ;
BERNARDI, F .
MOLECULAR PHYSICS, 1970, 19 (04) :553-&
[4]   C-H•••O hydrogen bond involving proline residues in α-helices [J].
Chakrabarti, P ;
Chakrabarti, S .
JOURNAL OF MOLECULAR BIOLOGY, 1998, 284 (04) :867-873
[5]   Hydrogen bond versus anti-hydrogen bond: A comparative analysis based on the electron density topology [J].
Cubero, E ;
Orozco, M ;
Hobza, P ;
Luque, FJ .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (32) :6394-6401
[6]   Are hydrogen bonds covalent or electrostatic? A molecular orbital comparison of molecules in electric fields and H-bonding environments [J].
Dannenberg, JJ ;
Haskamp, L ;
Masunov, A .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (35) :7083-7086
[7]   EFFECTIVE ATOMIC CHARGE MODEL FOR INFRARED INTENSITIES [J].
DECIUS, JC .
JOURNAL OF MOLECULAR SPECTROSCOPY, 1975, 57 (03) :348-362
[8]   THE OCCURRENCE OF C-H-CENTER-DOT-CENTER-DOT-CENTER-DOT-O HYDROGEN-BONDS IN PROTEINS [J].
DEREWENDA, ZS ;
LEE, L ;
DEREWENDA, U .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 252 (02) :248-262
[9]   ON THE INTERPRETATION OF INFRARED INTENSITIES IN PLANAR MOLECULAR-SYSTEMS [J].
DINUR, U .
CHEMICAL PHYSICS LETTERS, 1990, 166 (02) :211-216
[10]   DETERMINATION OF ATOMIC POINT CHARGES AND POINT DIPOLES FROM THE CARTESIAN DERIVATIVES OF THE MOLECULAR DIPOLE-MOMENT AND 2ND MOMENTS, AND FROM ENERGY 2ND DERIVATIVES OF PLANAR DIMERS .1. THEORY [J].
DINUR, U ;
HAGLER, AT .
JOURNAL OF CHEMICAL PHYSICS, 1989, 91 (05) :2949-2959