IR-UV ion-dip spectroscopy of N-benzylformamide clusters:: Stepwise hydration of a model peptide

被引:48
作者
Robertson, EG [1 ]
Hockridge, MR [1 ]
Jelfs, PD [1 ]
Simons, JP [1 ]
机构
[1] Phys & Theoret Chem Lab, Oxford OX1 3QZ, England
关键词
D O I
10.1021/jp002788d
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Fluorescence excitation, resonant two-photon ionization (R2PI) and IR-UV ion dip spectroscopy have been used to study conformers of N-benzylformamide (NBFA) and associated clusters including hydrates with up to n = 3 water molecules. The most stable conformer has a trans arrangement of the HNCO atoms. It is distinguished from the cis conformer by a higher frequency for the NH stretch (3478 cm(-1), compared to 3443 cm(-1)) and lower frequency for the amide I overtone (3435 cm(-1), compared to 3465 cm(-1)). The cis conformer forms cyclic H-bonded structures with one or two water molecules, binding via strong H-bonds to the neighboring C=O and NH groups. With the addition of a third water molecule, the cyclic water trimer binds to both these groups in preference to a linear chain of three waters. For trans-NBFA, a single water binds to the carbonyl group and is further stabilized by dispersive CH . . .O-water interactions. Two water molecules bind to the NH group instead and form a bridge to the, pi -system of the aromatic ring. A heterodimer species is also observed, composed of cis- and trans-NBFA. It is stabilized by NHtrans. . .O=C-cis and NHcis. . . pi (trans) H-bonds, which give rise to shifts in the NH stretch frequency of -102 and -28 cm(-1), respectively. Flexibility of the amide side chain plays a key role in promoting additional CH . . .O-water interactions in these clusters. When compared to the unsolvated conformers, some of the clusters exhibit considerable distortion in the dihedral angle tau (1) (C2C1CalphaN) and in tau (2) (C1CalphaNC), equivalent to the Ramachandran angle phi in proteins. Solvation also affects the photophysics of NBFA, as the clusters show normal fluorescence behavior while the SI states of the isolated molecules are affected by a competing, nonfluorescent decay process.
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页码:11714 / 11724
页数:11
相关论文
共 38 条
[1]  
Alberts B., 1983, MOL BIOL CELL
[2]  
Austin J. C., 1993, BIOMOLECULAR SPECT A, P55
[3]   Spectral density of medium strength H-bonds. Direct damping and intrinsic anharmonicity of the slow mode. Beyond adiabatic approximation [J].
Blaise, P ;
Henri-Rousseau, O .
CHEMICAL PHYSICS, 2000, 256 (01) :85-106
[4]  
BRADLEY D, 1996, NEW SCI, V2059, P22
[5]  
BUTZ P, IN PRESS J PHYS CH A
[6]   HIGH-RESOLUTION FOURIER-TRANSFORM SPECTRUM OF WATER BETWEEN 2930 AND 4255 CM-1 [J].
CAMYPEYRET, C ;
FLAUD, JM ;
GUELACHVILI, G ;
AMIOT, C .
MOLECULAR PHYSICS, 1973, 26 (04) :825-855
[7]   Molecular and supramolecular structures of N-phenyl formamide and its hydrated clusters [J].
Dickinson, JA ;
Hockridge, MR ;
Robertson, EG ;
Simons, JP .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (35) :6938-6949
[8]   Vibrational spectroscopy of small-sized hydrogen-bonded clusters and their ions [J].
Ebata, T ;
Fujii, A ;
Mikami, N .
INTERNATIONAL REVIEWS IN PHYSICAL CHEMISTRY, 1998, 17 (03) :331-361
[9]   Enzyme flexibility, solvent and 'weak' interactions characterize thrombin-ligand interactions: Implications for drug design [J].
Engh, RA ;
Brandstetter, H ;
Sucher, G ;
Eichinger, A ;
Baumann, U ;
Bode, W ;
Huber, R ;
Poll, T ;
Rudolph, R ;
vonderSaal, W .
STRUCTURE, 1996, 4 (11) :1353-1362
[10]   C-H center dot center dot center dot O hydrogen bonds in beta-sheets [J].
Fabiola, GF ;
Krishnaswamy, S ;
Nagarajan, V ;
Pattabhi, V .
ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1997, 53 :316-320