The DDBJ Japanese Genotype-phenotype Archive for genetic and phenotypic human data

被引：48

作者：

Kodama, Yuichi ^{[1
]}

Mashima, Jun ^{[1
]}

Kosuge, Takehide ^{[1
]}

Katayama, Toshiaki ^{[2
]}

Fujisawa, Takatomo ^{[1
]}

Kaminuma, Eli ^{[1
]}

Ogasawara, Osamu ^{[1
]}

Okubo, Kousaku ^{[1
]}

Takagi, Toshihisa ^{[1
,3
]}

Nakamura, Yasukazu ^{[1
]}

机构：

[1] Natl Inst Genet, IDDBJ Ctr, Shizuoka 4118540, Japan

[2] Database Ctr Life Sci, Chiba 2770871, Japan

[3] Japan Sci & Technol Agcy, Natl Biosci Database Ctr, Tokyo, Japan

来源：

NUCLEIC ACIDS RESEARCH | 2015年 / 43卷 / D1期

基金：

日本科学技术振兴机构;

关键词：

MULTIPLE SEQUENCE ALIGNMENT; CLUSTAL-W; GENERATION; SERVICES; BIOLOGY; SYSTEM; MAFFT;

D O I：

10.1093/nar/gku1120

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The DNA Data Bank of Japan Center (DDBJ Center; http://www.ddbj.nig.ac.jp) maintains and provides public archival, retrieval and analytical services for biological information. Since October 2013, DDBJ Center has operated the Japanese Genotype-phenotype Archive (JGA) in collaboration with our partner institute, the National Bioscience Database Center (NBDC) of the Japan Science and Technology Agency. DDBJ Center provides the JGA database system which securely stores genotype and phenotype data collected from individuals whose consent agreements authorize data release only for specific research use. NBDC has established guidelines and policies for sharing human-derived data and reviews data submission and usage requests from researchers. In addition to the JGA project, DDBJ Center develops Semantic Web technologies for data integration and sharing in collaboration with the Database Center for Life Science. This paper describes the overview of the JGA project, updates to the DDBJ databases, and services for data retrieval, analysis and integration.

引用

页码：D18 / D22

页数：5

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