Life is Physics: Evolution as a Collective Phenomenon Far from Equilibrium

被引:141
作者
Goldenfeld, Nigel [1 ,2 ]
Woese, Carl [1 ,2 ,3 ]
机构
[1] Univ Illinois, Dept Phys, Ctr Phys Living Cells, Urbana, IL 61801 USA
[2] Univ Illinois, Inst Genom Biol, Urbana, IL 61801 USA
[3] Univ Illinois, Dept Microbiol, Urbana, IL 61801 USA
来源
ANNUAL REVIEW OF CONDENSED MATTER PHYSICS, VOL 2 | 2011年 / 2卷
关键词
evolution; collective effects; statistical mechanics; genes; HORIZONTAL GENE-TRANSFER; SYSTEMS GAME-THEORY; RAPID EVOLUTION; TRANSPOSABLE ELEMENTS; BACTERIAL; DYNAMICS; COEVOLUTION; ADAPTATION; DNA; MUTATION;
D O I
10.1146/annurev-conmatphys-062910-140509
中图分类号
O469 [凝聚态物理学];
学科分类号
070205 ;
摘要
Evolution is the fundamental physical process that gives rise to biological phenomena. Yet it is widely treated as a subset of population genetics, and thus its scope is artificially limited. As a result, the key issues of how rapidly evolution occurs and its coupling to ecology have not been satisfactorily addressed and formulated. The lack of widespread appreciation for, and understanding of, the evolutionary process has arguably retarded the development of biology as a science, with disastrous consequences for its applications to medicine, ecology, and the global environment. This review focuses on evolution as a problem in nonequilibrium statistical mechanics, where the key dynamical modes are collective, as evidenced by the plethora of mobile genetic elements whose role in shaping evolution has been revealed by modern genomic surveys. We discuss how condensed matter physics concepts might provide a useful perspective in evolutionary biology, the conceptual failings of the modern evolutionary synthesis, the open-ended growth of complexity, and the quintessentially self-referential nature of evolutionary dynamics.
引用
收藏
页码:375 / 399
页数:25
相关论文
共 200 条
[1]   Stabilization of large generalized Lotka-Volterra foodwebs by evolutionary feedback [J].
Ackland, GJ ;
Gallagher, ID .
PHYSICAL REVIEW LETTERS, 2004, 93 (15) :158701-1
[2]   Digital genetics: unravelling the genetic basis of evolution [J].
Adami, C .
NATURE REVIEWS GENETICS, 2006, 7 (02) :109-118
[3]  
Adami C., 1994, Artificial Life IV. Proceedings of the Fourth International Workshop on the Synthesis and Simulation of Living Systems, P377
[4]   What is complexity? [J].
Adami, C .
BIOESSAYS, 2002, 24 (12) :1085-1094
[5]  
Adami C., 1995, P 3 EUROPEAN C ADV A, P503
[6]   Dynamical systems game theory and dynamics of games [J].
Akiyama, E ;
Kaneko, R .
PHYSICA D-NONLINEAR PHENOMENA, 2000, 147 (3-4) :221-258
[7]   Dynamical systems game theory II - A new approach to the problem of the social dilemma [J].
Akiyama, E ;
Kaneko, K .
PHYSICA D-NONLINEAR PHENOMENA, 2002, 167 (1-2) :36-71
[8]   Color superconductivity in dense quark matter [J].
Alford, Mark G. ;
Schmitt, Andreas ;
Rajagopal, Krishna ;
Schaefer, Thomas .
REVIEWS OF MODERN PHYSICS, 2008, 80 (04) :1455-1515
[9]   POSSIBLE IMPORTANCE OF TRANSFER FACTORS IN BACTERIAL EVOLUTION [J].
ANDERSON, ES .
NATURE, 1966, 209 (5023) :637-&
[10]   EVOLUTIONARY SIGNIFICANCE OF VIRUS INFECTION [J].
ANDERSON, NG .
NATURE, 1970, 227 (5265) :1346-&