Structural Insights into Radical Generation by the Radical SAM Superfamily

被引:187
作者
Vey, Jessica L. [1 ]
Drennan, Catherine L. [1 ,2 ,3 ]
机构
[1] MIT, Dept Chem, Cambridge, MA 02139 USA
[2] MIT, Dept Biol, Cambridge, MA 02139 USA
[3] MIT, Howard Hughes Med Inst, Cambridge, MA 02139 USA
关键词
PYRUVATE FORMATE-LYASE; COLI BIOTIN SYNTHASE; III OXIDASE HEMN; ELECTRON-PARAMAGNETIC-RESONANCE; MOLYBDENUM COFACTOR DEFICIENCY; DEPENDENT ENZYME MOAA; SET-DOMAIN PROTEINS; UNIQUE IRON SITE; S-ADENOSYLMETHIONINE; ESCHERICHIA-COLI;
D O I
10.1021/cr9002616
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The radical SAM enzymes, also referred to as the AdoMet radical enzymes are a newly identified enzyme superfamily capable of catalyzing radical chemistry similar to, but more extensive than, that performed by the AdoCbl-dependent enzymes. Radical SAM enzymes all catalyze radical chemistry and are united as a superfamily by their common mechanism of radical generation. The radical SAM superfamily has been expanded by the characterization of ThiC. While studying thiamine pyrimidine biosynthesis, Downs et al. found that the protein ThiC carries out radical SAM chemistry but does not contain the conserved motif. One of the two initial radical SAM enzymes to be structurally characterized, HemN is one of the more recently biochemically characterized members of this superfamily. Of all of the radical SAM enzymes, Lysine Aminomutase (LAM) is the best characterized. The radical SAM enzyme HydE from Thermotoga maritima is one of three enzymes recently identified as essential for maturation of the hydrogenase from that organism.
引用
收藏
页码:2487 / 2506
页数:20
相关论文
共 136 条
[1]   SET-domain proteins of the Su(var)3-9, E(z) and trithorax families [J].
Alvarez-Venegas, R ;
Avramova, Z .
GENE, 2002, 285 (1-2) :25-37
[2]  
Anantharaman V, 2002, J MOL MICROB BIOTECH, V4, P71
[3]   Post-translational Modification of Ribosomal Proteins STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF RimO FROM THERMOTOGA MARITIMA, A RADICAL S-ADENOSYLMETHIONINE METHYLTHIOTRANSFERASE [J].
Arragain, Simon ;
Garcia-Serres, Ricardo ;
Blondin, Genevieve ;
Douki, Thierry ;
Clemancey, Martin ;
Latour, Jean-Marc ;
Forouhar, Farhad ;
Neely, Helen ;
Montelione, Gaetano T. ;
Hunt, John F. ;
Mulliez, Etienne ;
Fontecave, Marc ;
Atta, Mohamed .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2010, 285 (08) :5792-5801
[4]   S-Adenosylmethionine-dependent radical-based modification of biological macromolecules [J].
Atta, Mohamed ;
Mulliez, Etienne ;
Arragain, Simon ;
Forouhar, Farhad ;
Hunt, John F. ;
Fontecave, Marc .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2010, 20 (06) :684-692
[5]   Fe-s cluster assembly pathways in bacteria [J].
Ayala-Castro, Carla ;
Saini, Avneesh ;
Outten, F. Wayne .
MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS, 2008, 72 (01) :110-+
[6]   AN ORGANIC RADICAL IN THE LYSINE 2,3-AMINOMUTASE REACTION [J].
BALLINGER, MD ;
REED, GH ;
FREY, PA .
BIOCHEMISTRY, 1992, 31 (04) :949-953
[7]   Iron-sulfur cluster biosynthesis [J].
Bandyopadhyay, Sibali ;
Chandramouli, Kala ;
Johnson, Michael K. .
BIOCHEMICAL SOCIETY TRANSACTIONS, 2008, 36 :1112-1119
[8]  
BARANIAK J, 1989, J BIOL CHEM, V264, P1357
[9]   Crystal structure of biotin synthase, an S-adenosylmethionine-dependent radical enzyme [J].
Berkovitch, F ;
Nicolet, Y ;
Wan, JT ;
Jarrett, JT ;
Drennan, CL .
SCIENCE, 2004, 303 (5654) :76-79
[10]   ISOLATION AND STRUCTURE DETERMINATION OF FLUORESCENT BASE FROM BOVINE LIVER PHENYLALANINE TRANSFER RIBONUCLEIC-ACID [J].
BLOBSTEIN, SH ;
GRUNBERGER, D ;
WEINSTEIN, IB ;
NAKANISHI, K .
BIOCHEMISTRY, 1973, 12 (02) :188-193