Genetic epidemiology with a Capital E, ten years after

被引:17
作者
Khoury, Muin J. [1 ]
Gwinn, Marta [1 ]
Clyne, Mindy [1 ]
Yu, Wei [1 ]
机构
[1] Ctr Dis Control & Prevent, Off Publ Hlth Genom, Atlanta, GA USA
关键词
biology; epidemiology; genetics; genomics; informatics; medicine; public health; HUMAN GENOME EPIDEMIOLOGY; EGAPP WORKING GROUP; MACULAR DEGENERATION; WIDE ASSOCIATION; RISK-FACTORS; ENVIRONMENT INTERACTION; KNOWLEDGE-BASE; HAPLOTYPE MAP; DISEASE; PREVALENCE;
D O I
10.1002/gepi.20634
中图分类号
Q3 [遗传学];
学科分类号
071007 [遗传学];
摘要
More than a decade after Duncan Thomas gave his presidential address at the International Society for Genetic Epidemiology entitled Genetic Epidemiology with a Capital E, genetic epidemiology has gone mainstream. Epidemiology has taken its place not only in gene discovery studies but also in characterizing genetic effects and gene-environment interactions in populations. Furthermore, epidemiologic principles are being applied to the evaluation of genetic tests. We used an online informatics tool, the HuGE Navigator, to describe the growth in the field in the past decade. We developed the HuGE Navigator as a means to continuously monitor the evolving information obtained from epidemiologic studies of the human genome. Between 2001 and 2010, the HuGE Navigator included 57,005 articles published in 2,396 journals. During that period, the annual number of publications increased almost four-fold. The articles included 986 genome-wide association studies and 1,879 meta-analyses of gene-disease associations. The total number of authors of published studies grew from 12,907 in 2001 to 48,389 in 2010. The number of diseases also increased over time, from 697 medical subject headings in 2001 to 1,404 in 2010. Gene-environment interaction was mentioned explicitly in 17% of published abstracts, almost half of which focused on gene-drug interactions. Clearly, genetic epidemiology has gone capital E in the past decade; however, the ever-expanding volume and variety of genomic information poses a formidable challenge for developing appropriate methods for analysis, synthesis, and inference on complex genetic and environmental effects. We extend Duncan Thomas' capital E to include Evaluation as the tools of epidemiology are increasingly used to assess how genome-based information can be applied in medicine and public health. Genet. Epidemiol. 35:845852, 2011. (C) 2011 Wiley Periodicals, Inc.
引用
收藏
页码:845 / 852
页数:8
相关论文
共 65 条
[1]
Ahrens W, 2005, HDB EPIDEMIOLOGY, P1
[2]
Systematic meta-analyses and field synopsis of genetic association studies in schizophrenia: the SzGene database [J].
Allen, Nicole C. ;
Bagade, Sachin ;
McQueen, Matthew B. ;
Ioannidis, John P. A. ;
Kavvoura, Fotini K. ;
Khoury, Muin J. ;
Tanzi, Rudolph E. ;
Bertram, Lars .
NATURE GENETICS, 2008, 40 (07) :827-834
[3]
A haplotype map of the human genome [J].
Altshuler, D ;
Brooks, LD ;
Chakravarti, A ;
Collins, FS ;
Daly, MJ ;
Donnelly, P ;
Gibbs, RA ;
Belmont, JW ;
Boudreau, A ;
Leal, SM ;
Hardenbol, P ;
Pasternak, S ;
Wheeler, DA ;
Willis, TD ;
Yu, FL ;
Yang, HM ;
Zeng, CQ ;
Gao, Y ;
Hu, HR ;
Hu, WT ;
Li, CH ;
Lin, W ;
Liu, SQ ;
Pan, H ;
Tang, XL ;
Wang, J ;
Wang, W ;
Yu, J ;
Zhang, B ;
Zhang, QR ;
Zhao, HB ;
Zhao, H ;
Zhou, J ;
Gabriel, SB ;
Barry, R ;
Blumenstiel, B ;
Camargo, A ;
Defelice, M ;
Faggart, M ;
Goyette, M ;
Gupta, S ;
Moore, J ;
Nguyen, H ;
Onofrio, RC ;
Parkin, M ;
Roy, J ;
Stahl, E ;
Winchester, E ;
Ziaugra, L ;
Shen, Y .
NATURE, 2005, 437 (7063) :1299-1320
[4]
Recommendations from the EGAPP Working Group: Routine testing for Factor V Leiden (R506Q) and prothrombin (20210G>A) mutations in adults with a history of idiopathic venous thromboembolism and their adult family members [J].
Berg, Alfred O. ;
Botkin, Jeffrey ;
Calonge, Ned ;
Campos-Outcalt, Doug ;
Haddow, James E. ;
Hayes, Maxine ;
Kaye, Celia ;
Klein, Roger D. ;
Offit, Kenneth ;
Pauker, Stephen G. ;
Piper, Margaret ;
Richards, Carolyn Sue ;
Scott, Joan A. ;
Strickland, Ora L. ;
Teutsch, Steven ;
Veenstra, David L. .
GENETICS IN MEDICINE, 2011, 13 (01) :67-76
[5]
Recommendations from the EGAPP Working Group: Genomic profiling to assess cardiovascular risk to improve cardiovascular health [J].
Berg, Alfred O. ;
Botkin, Jeffrey ;
Calonge, Ned ;
Campos-Outcalt, Doug ;
Haddow, James E. ;
Hayes, Maxine ;
Kaye, Celia ;
Klein, Roger D. ;
Offit, Kenneth ;
Pauker, Stephen G. ;
Piper, Margaret ;
Richards, Carolyn Sue ;
Scott, Joan A. ;
Strickland, Ora L. ;
Teutsch, Steven ;
Veenstra, David L. .
GENETICS IN MEDICINE, 2010, 12 (12) :839-843
[6]
Bookman EB, 2011, GENET EPIDEMIOL 0211, V11
[7]
Outcomes of interest in evidence-based evaluations of genetic tests [J].
Botkin, Jeffrey R. ;
Teutsch, Steven M. ;
Kaye, Celia I. ;
Hayes, Maxine ;
Haddow, James E. ;
Bradley, Linda A. ;
Szegda, Kathleen ;
Dotson, W. David .
GENETICS IN MEDICINE, 2010, 12 (04) :228-235
[8]
A vision for the future of genomics research [J].
Collins, FS ;
Green, ED ;
Guttmacher, AE ;
Guyer, MS .
NATURE, 2003, 422 (6934) :835-847
[9]
Congdon N, 2004, ARCH OPHTHALMOL-CHIC, V122, P477
[10]
Synopsis of Preterm Birth Genetic Association Studies: The Preterm Birth Genetics Knowledge Base (PTBGene) [J].
Dolan, S. M. ;
Hollegaard, M. V. ;
Merialdi, M. ;
Betran, A. P. ;
Allen, T. ;
Abelow, C. ;
Nace, J. ;
Lin, B. K. ;
Khoury, M. J. ;
Ioannidis, J. P. A. ;
Bagade, S. ;
Zheng, X. ;
Dubin, R. A. ;
Bertram, L. ;
Edwards, D. R. Velez ;
Menon, R. .
PUBLIC HEALTH GENOMICS, 2010, 13 (7-8) :514-523