Information-theoretic approach to network modularity

被引:59
作者
Ziv, E [1 ]
Middendorf, M
Wiggins, CH
机构
[1] Columbia Univ, Coll Phys & Surg, Dept Biomed Engn, New York, NY 10027 USA
[2] Columbia Univ, Dept Phys, New York, NY 10027 USA
[3] Columbia Univ, Dept Appl Phys & Appl Math, Ctr Computat Biol & Bioinformat, New York, NY 10027 USA
关键词
D O I
10.1103/PhysRevE.71.046117
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Exploiting recent developments in information theory, we propose, illustrate, and validate a principled information-theoretic algorithm for module discovery and the resulting measure of network modularity. This measure is an order parameter (a dimensionless number between 0 and 1). Comparison is made with other approaches to module discovery and to quantifying network modularity (using Monte Carlo generated Erdos-like modular networks). Finally, the network information bottleneck (NIB) algorithm is applied to a number of real world networks, including the "social" network of coauthors at the 2004 APS March Meeting.
引用
收藏
页数:9
相关论文
共 30 条
  • [1] Artzy-Randrup Y, 2004, SCIENCE, V305
  • [2] BACH FR, 2004, ADV NEURAL INFORMATI, V16
  • [3] Chung FR., 1997, Spectral graph theory
  • [4] THE ASSEMBLY OF SPECIES COMMUNITIES - CHANCE OR COMPETITION
    CONNOR, EF
    SIMBERLOFF, D
    [J]. ECOLOGY, 1979, 60 (06) : 1132 - 1140
  • [5] COVER TM, 1990, ELEMENTS INFORMATION
  • [6] Evidence for dynamically organized modularity in the yeast protein-protein interaction network
    Han, JDJ
    Bertin, N
    Hao, T
    Goldberg, DS
    Berriz, GF
    Zhang, LV
    Dupuy, D
    Walhout, AJM
    Cusick, ME
    Roth, FP
    Vidal, M
    [J]. NATURE, 2004, 430 (6995) : 88 - 93
  • [7] From molecular to modular cell biology
    Hartwell, LH
    Hopfield, JJ
    Leibler, S
    Murray, AW
    [J]. NATURE, 1999, 402 (6761) : C47 - C52
  • [8] HOLLAND P, 1976, SOCIOL METHODOL, V7, P1
  • [9] The large-scale organization of metabolic networks
    Jeong, H
    Tombor, B
    Albert, R
    Oltvai, ZN
    Barabási, AL
    [J]. NATURE, 2000, 407 (6804) : 651 - 654
  • [10] Kondor R. I., 2002, P 19 INT C MACH LEAR, V2002, P315, DOI DOI 10.1109/ACCESS.2020.2967348