Enhanced sampling in simulations of dense systems:: The phase behavior of collapsed polymer globules

被引:35
作者
Paul, W [1 ]
Müller, M [1 ]
机构
[1] Johannes Gutenberg Univ Mainz, Inst Phys, D-55099 Mainz, Germany
关键词
D O I
10.1063/1.1379763
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Slow relaxation due to dense packing encumbers the simulation of a variety of many particle systems like, for instance, collapsed polymers (folded proteins) or structural glasses. We propose to overcome this problem by a new algorithm, assigning each particle a fourth space coordinate and treating an expanded ensemble of systems of which the one with all fourth coordinates equal to zero is the physical system. An application of this simulation strategy to the coil-globule transition of homopolymers using the bond-fluctuation model reveals a hitherto unfound first-order liquid to solid transition of the collapsed globule. (C) 2001 American Institute of Physics.
引用
收藏
页码:630 / 635
页数:6
相关论文
共 30 条
[1]   Phase transitions of single semistiff polymer chains [J].
Bastolla, U ;
Grassberger, P .
JOURNAL OF STATISTICAL PHYSICS, 1997, 89 (5-6) :1061-1078
[2]   MULTICANONICAL ALGORITHMS FOR 1ST ORDER PHASE-TRANSITIONS [J].
BERG, BA ;
NEUHAUS, T .
PHYSICS LETTERS B, 1991, 267 (02) :249-253
[3]  
BINDER K, 1989, ADV CHEM PHYS, V76, P91
[4]   Parallel excluded volume tempering for polymer melts -: art. no. 016701 [J].
Bunker, A ;
Dünweg, B .
PHYSICAL REVIEW E, 2001, 63 (01)
[5]   Multi-self-overlap ensemble for protein folding: Ground state search and thermodynamics [J].
Chikenji, G ;
Kikuchi, M ;
Iba, Y .
PHYSICAL REVIEW LETTERS, 1999, 83 (09) :1886-1889
[6]   Monte Carlo methods for polymeric systems [J].
de Pablo, JJ ;
Escobedo, FA .
MONTE CARLO METHODS IN CHEMICAL PHYSICS, 1999, 105 :337-367
[7]   INTERDIFFUSION AND SELF-DIFFUSION IN POLYMER MIXTURES - A MONTE-CARLO STUDY [J].
DEUTSCH, HP ;
BINDER, K .
JOURNAL OF CHEMICAL PHYSICS, 1991, 94 (03) :2294-2304
[8]   New Monte Carlo algorithm for protein folding [J].
Frauenkron, H ;
Bastolla, U ;
Gerstner, E ;
Grassberger, P ;
Nadler, W .
PHYSICAL REVIEW LETTERS, 1998, 80 (14) :3149-3152
[9]  
Götze W, 1999, J PHYS-CONDENS MAT, V11, pA1, DOI 10.1088/0953-8984/11/10A/002
[10]   Pruned-enriched Rosenbluth method: Simulations of theta polymers of chain length up to 1,000,000 [J].
Grassberger, P .
PHYSICAL REVIEW E, 1997, 56 (03) :3682-3693