The nucleic acid database: A resource for nucleic acid science

被引：19

作者：

Berman, HM ^{[1
]}

Zardecki, C ^{[1
]}

Westbrook, J ^{[1
]}

机构：

[1] Rutgers State Univ, Dept Chem, NDB, Piscataway, NJ 08854 USA

来源：

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY | 1998年 / 54卷

关键词：

D O I：

10.1107/S0907444998007926

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The Nucleic Acid Database (NDB) distributes information about nucleic acid-containing structures. Here the information content of the database as well as the query capabilities are described. A summary of how the technology developed by this project has been used to develop other macromolecular databases is given.

引用

页码：1095 / 1104

页数：10

共 18 条

[1] CAMBRIDGE CRYSTALLOGRAPHIC DATA CENTER - COMPUTER-BASED SEARCH, RETRIEVAL, ANALYSIS AND DISPLAY OF INFORMATION [J].

ALLEN, FH ;

BELLARD, S ;

BRICE, MD ;

CARTWRIGHT, BA ;

DOUBLEDAY, A ;

HIGGS, H ;

HUMMELINK, T ;

HUMMELINKPETERS, BG ;

KENNARD, O ;

MOTHERWELL, WDS ;

RODGERS, JR ;

WATSON, DG .

ACTA CRYSTALLOGRAPHICA SECTION B-STRUCTURAL SCIENCE, 1979, 35 (OCT) :2331-2339

[2] THE NUCLEIC-ACID DATABASE - A COMPREHENSIVE RELATIONAL DATABASE OF 3-DIMENSIONAL STRUCTURES OF NUCLEIC-ACIDS [J].

BERMAN, HM ;

OLSON, WK ;

BEVERIDGE, DL ;

WESTBROOK, J ;

GELBIN, A ;

DEMENY, T ;

HSIEH, SH ;

SRINIVASAN, AR ;

SCHNEIDER, B .

BIOPHYSICAL JOURNAL, 1992, 63 (03) :751-759

[3] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].

BERNSTEIN, FC ;

KOETZLE, TF ;

WILLIAMS, GJB ;

MEYER, EF ;

BRICE, MD ;

RODGERS, JR ;

KENNARD, O ;

SHIMANOUCHI, T ;

TASUMI, M .

JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542

[4] Macromolecular crystallographic information file [J].

Bourne, PE ;

Berman, HM ;

McMahon, B ;

Watenpaugh, KD ;

Westbrook, JD ;

Fitzgerald, PMD .

MACROMOLECULAR CRYSTALLOGRAPHY, PT B, 1997, 277 :571-590

[5]

Brunger A. T., 1992, X PLOR VERSION 3 1 S

[6] Geometric parameters in nucleic acids: Nitrogenous bases [J].

Clowney, L ;

Jain, SC ;

Srinivasan, AR ;

Westbrook, J ;

Olson, WK ;

Berman, HM .

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (03) :509-518

[7]

CLOWNEY L, 1997, NDB241 RUTG U

[8]

FENG Z, 1997, NDB220 RUTG U

[9] Geometric parameters in nucleic acids: Sugar and phosphate constituents [J].

Gelbin, A ;

Schneider, B ;

Clowney, L ;

Hsieh, SH ;

Olson, WK ;

Berman, HM .

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (03) :519-529

[10] BIOLOGICAL MACROMOLECULE CRYSTALLIZATION DATABASE, VERSION-3.0 - NEW FEATURES, DATA AND THE NASA ARCHIVE FOR PROTEIN CRYSTAL-GROWTH DATA [J].

GILLILAND, GL ;

TUNG, M ;

BLAKESLEE, DM ;

LADNER, JE .

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1994, 50 :408-413

← 1 2 →