Genetic variation in the Sorbs of eastern Germany in the context of broader European genetic diversity

被引:51
作者
Veeramah, Krishna R. [1 ,2 ,3 ]
Toenjes, Anke [4 ]
Kovacs, Peter [4 ]
Gross, Arnd [5 ,6 ]
Wegmann, Daniel [1 ]
Geary, Patrick [3 ]
Gasperikova, Daniela [7 ]
Klimes, Iwar [7 ]
Scholz, Markus [5 ,6 ]
Novembre, John [1 ]
Stumvoll, Michael [4 ]
机构
[1] Univ Calif Los Angeles, Interdept Program Bioinformat, Dept Eco & Evo Biol, Los Angeles, CA 90095 USA
[2] Univ Calif Los Angeles, Ctr Soc & Genet, Los Angeles, CA 90095 USA
[3] Univ Calif Los Angeles, Dept Hist, Los Angeles, CA 90095 USA
[4] Univ Leipzig, Dept Med, D-04103 Leipzig, Germany
[5] Univ Leipzig, Inst Med Informat Stat & Epidemiol, D-04103 Leipzig, Germany
[6] Univ Leipzig, LIFE Ctr Leipzig Interdisciplinary Res Cluster Ge, D-04103 Leipzig, Germany
[7] Slovak Acad Sci, Inst Expt Endocrinol, Bratislava, Slovakia
基金
美国安德鲁·梅隆基金会;
关键词
Sorbs; principle component analysis; genetic isolates; genetic diversity; population history; genetic; SELF-CONTAINED POPULATION; GENOME-WIDE ASSOCIATION; COMMON DISEASE GENES; LINKAGE DISEQUILIBRIUM; HUMAN OBESITY; ISOLATE; HAPLOTYPE; SELECTION; VARIANTS; PATTERNS;
D O I
10.1038/ejhg.2011.65
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Population isolates have long been of interest to genetic epidemiologists because of their potential to increase power to detect disease-causing genetic variants. The Sorbs of Germany are considered as cultural and linguistic isolates and have recently been the focus of disease association mapping efforts. They are thought to have settled in their present location in eastern Germany after a westward migration from a largely Slavic-speaking territory during the Middle Ages. To examine Sorbian genetic diversity within the context of other European populations, we analyzed genotype data for over 30 000 autosomal single-nucleotide polymorphisms from over 200 Sorbs individuals. We compare the Sorbs with other European individuals, including samples from population isolates. Despite their geographical proximity to German speakers, the Sorbs showed greatest genetic similarity to Polish and Czech individuals, consistent with the linguistic proximity of Sorbian to other West Slavic languages. The Sorbs also showed evidence of subtle levels of genetic isolation in comparison with samples from non-isolated European populations. The level of genetic isolation was less than that observed for the Sardinians and French Basque, who were clear outliers on multiple measures of isolation. The finding of the Sorbs as only a minor genetic isolate demonstrates the need to genetically characterize putative population isolates, as they possess a wide range of levels of isolation because of their different demographic histories. European Journal of Human Genetics (2011) 19, 995-1001; doi: 10.1038/ejhg.2011.65; published online 11 May 2011
引用
收藏
页码:995 / 1001
页数:7
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