Dimethylsulfoxide-stabilized conformer of guanine-adenine repeat strand of DNA

被引:11
作者
Kypr, J [1 ]
Vorlícková, M [1 ]
机构
[1] Acad Sci Czech Republ, Inst Biophys, CZ-61265 Brno, Czech Republic
关键词
DNA; conformation; dimethylsulfoxide; alpha helix; dimerization;
D O I
10.1002/bip.1000
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Circular dichroism spectroscopy and other methods are used to show that the addition of dimethylsulfoxide causes reversible folding of the (GA)(10) strand of DNA into an ordered single-stranded conformer. The ordered conformer melts in a cooperative way and it does not contain protonated adenine. The (TA)(10), (A)(20), and (G)(20) are all unstable in this conformer. To the best of our knowledge, this is the first known ordered conformer of DNA that is stabilized by dimethylsulfoxide. This conformer might be a DNA analog of the protein alpha helix, which is an interesting idea for thinking about the evolution of DNA. (C) 2001 John Wiley & Sons, Inc.
引用
收藏
页码:81 / 84
页数:4
相关论文
共 23 条
[1]   Uniform amplification of a mixture of deoxyribonucleic acids with varying GC content [J].
Baskaran, N ;
Kandpal, RP ;
Bhargava, AK ;
Glynn, MW ;
Bale, A ;
Weissman, SM .
GENOME RESEARCH, 1996, 6 (07) :633-638
[2]   RATES OF FORMATION AND THERMAL STABILITIES OF RNA-DNA AND DNA-DNA DUPLEXES AT HIGH-CONCENTRATIONS OF FORMAMIDE [J].
CASEY, J ;
DAVIDSON, N .
NUCLEIC ACIDS RESEARCH, 1977, 4 (05) :1539-1552
[3]   DIMETHYL SULFOXIDE-MEDIATED PRIMER TM REDUCTION - A METHOD FOR ANALYZING THE ROLE OF RENATURATION TEMPERATURE IN THE POLYMERASE CHAIN-REACTION [J].
CHESTER, N ;
MARSHAK, DR .
ANALYTICAL BIOCHEMISTRY, 1993, 209 (02) :284-290
[4]   POLYNUCLEOTIDES .18. SINGLE-STRANDED NUCLEIC-ACID HELICAL SECONDARY STRUCTURE STABILIZED BY IONIC BONDS - D(A+-G)10 [J].
DOLINNAYA, NG ;
FRESCO, JR .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1992, 89 (19) :9242-9246
[5]   MOLECULAR AND THERMODYNAMIC PROPERTIES OF D(A+-G)10, A SINGLE-STRANDED NUCLEIC-ACID HELIX WITHOUT PAIRED OR STACKED BASES [J].
DOLINNAYA, NG ;
BRASWELL, EH ;
FOSSELLA, JA ;
KLUMP, H ;
FRESCO, JR .
BIOCHEMISTRY, 1993, 32 (38) :10263-10270
[6]   COOPERATIVE CONFORMATIONAL TRANSITIONS OF LINEAR BIOPOLYMERS [J].
ENGEL, J ;
SCHWARZ, G .
ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 1970, 9 (06) :389-+
[7]   COOPERATIVITY - OVER-THE-HILL [J].
FORSEN, S ;
LINSE, S .
TRENDS IN BIOCHEMICAL SCIENCES, 1995, 20 (12) :495-497
[9]   ASSOCIATION BY HYDROGEN BONDING OF FREE NUCLEOSIDES IN NON-AQUEOUS SOLUTION [J].
KATZ, L ;
PENMAN, S .
JOURNAL OF MOLECULAR BIOLOGY, 1966, 15 (01) :220-+
[10]   Peptide conformations in alcohol and water: Analyses by the reference interaction site model theory [J].
Kinoshita, M ;
Okamoto, Y ;
Hirata, F .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2000, 122 (12) :2773-2779