Folding of a universal ribozyme: the ribonuclease P RNA

被引：23

作者：

Baird, Nathan J. ^{[1
,2
]}

Fang, Xing-Wang ^{[3
]}

Srividya, Narayanan ^{[3
]}

Pan, Tao ^{[3
]}

Sosnick, Tobin R. ^{[2
,3
]}

机构：

[1] Univ Chicago, Dept Chem, Chicago, IL 60637 USA

[2] Univ Chicago, Inst Biophys Dynam, Chicago, IL 60637 USA

[3] Univ Chicago, Dept Biochem & Mol Biol, Chicago, IL 60637 USA

来源：

QUARTERLY REVIEWS OF BIOPHYSICS | 2007年 / 40卷 / 02期

关键词：

D O I：

10.1017/S0033583507004623

中图分类号：

Q6 [生物物理学];

学科分类号：

071011 ;

摘要：

Ribonuclease P is among the first ribozymes discovered, and is the only ubiquitously occurring ribozyme besides the ribosome. The bacterial RNase P RNA is catalytically active without its protein subunit and has been studied for over two decades as a model system for RNA catalysis, structure and folding. This review focuses on the thermodynamic, kinetic and structural frameworks derived from the folding studies of bacterial RNase P RNA.

引用

页码：113 / 161

页数：49

共 110 条

[1] SPECIFIC NUCLEUS AS THE TRANSITION-STATE FOR PROTEIN-FOLDING - EVIDENCE FROM THE LATTICE MODEL [J].

ABKEVICH, VI ;

GUTIN, AM ;

SHAKHNOVICH, EI .

BIOCHEMISTRY, 1994, 33 (33) :10026-10036

[2]

Altman S., 1999, Cold Spring Harbor Monograph Archive, V37, P351

[3] Structural basis for altering the stability of homologous RNAs from a mesophilic and a thermophilic bacterium [J].

Baird, NJ ;

Srividya, N ;

Krasilnikov, AS ;

Mondragón, A ;

Sosnick, TR ;

Pan, T .

RNA, 2006, 12 (04) :598-606

[4] Structure of a folding intermediate reveals the interplay between core and peripheral elements in RNA folding [J].

Baird, NJ ;

Westhof, E ;

Qin, H ;

Pan, T ;

Sosnick, TR .

JOURNAL OF MOLECULAR BIOLOGY, 2005, 352 (03) :712-722

[5] The complete atomic structure of the large ribosomal subunit at 2.4 Å resolution [J].

Ban, N ;

Nissen, P ;

Hansen, J ;

Moore, PB ;

Steitz, TA .

SCIENCE, 2000, 289 (5481) :905-920

[6] Exploration of the transition state for tertiary structure formation between an RNA helix and a large structured RNA [J].

Bartley, LE ;

Zhuang, XW ;

Das, R ;

Chu, S ;

Herschlag, D .

JOURNAL OF MOLECULAR BIOLOGY, 2003, 328 (05) :1011-1026

[7] Ion-induced folding of the hammerhead ribozyme: a fluorescence resonance energy transfer study [J].

Bassi, GS ;

Murchie, AIH ;

Walter, F ;

Clegg, RM ;

Lilley, DMJ .

EMBO JOURNAL, 1997, 16 (24) :7481-7489

[8] Global identification of human transcribed sequences with genome tiling arrays [J].

Bertone, P ;

Stolc, V ;

Royce, TE ;

Rozowsky, JS ;

Urban, AE ;

Zhu, XW ;

Rinn, JL ;

Tongprasit, W ;

Samanta, M ;

Weissman, S ;

Gerstein, M ;

Snyder, M .

SCIENCE, 2004, 306 (5705) :2242-2246

[9] Single-molecule transition-state analysis of RNA folding [J].

Bokinsky, G ;

Rueda, D ;

Misra, VK ;

Rhodes, MM ;

Gordus, A ;

Babcock, HP ;

Walter, NG ;

Zhuang, XW .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2003, 100 (16) :9302-9307

[10] The Ribonuclease P Database [J].

Brown, JW .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :314-314

← 1 2 3 4 5 6 7 8 9 10 →